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Larry Simpson
Hi

I have a question about the use of BedTools in Galaxy. I am trying to obtain a graph or table of the number of RNA reads mapped to different locations on my custom genome. When I try running "Create a Bedgraph of Genome Coverage" it requires selection of the "Genome Build" from a dropdown list. Is it possible for the program to utilize a custom genome not in this list?



Larry Simpson
UCLA



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Re: re

Björn Grüning-2
Hi Larry,

you can build custom genomes in Galaxy.
More details in the Galaxy wiki:

https://wiki.galaxyproject.org/Learn/CustomGenomes

Cheers,
Bjoern

> Hi
>
>
> I have a question about the use of BedTools in Galaxy. I am trying to
> obtain a graph or table of the number of RNA reads mapped to different
> locations on my custom genome. When I try running "Create a Bedgraph
> of Genome Coverage" it requires selection of the "Genome Build" from a
> dropdown list. Is it possible for the program to utilize a custom
> genome not in this list?
>
>
>
>
>
>
> Larry Simpson
> UCLA
>
>
>
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>
>   http://galaxyproject.org/search/mailinglists/


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/