problem with scientific notation sorting and filtering in galaxy

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problem with scientific notation sorting and filtering in galaxy

Douglas Cavener
I have found that numbers in scientific notation (e.g 9.8E-9) are incorrectly sorted or filtered by Galaxy. Looks like the negative exponent is ignored and so if you sorting something like P values (see example below) then you find these ordered above P=1 instead at the other end of the list where P is near zero. In the example below a KEGG list is ordered on column 5 in asending order by galaxy. If you scroll to the bottom of the list, however, you will see the smallest numbers all of which are in scientific notation. I should note that I can can copy this into excel and excel will properly sort scientific notation. So this seems to be a specific problem with Galaxy. I found this problem with both filtering and sorting functions of Galaxy. 
Doug Cavener

410.53261.00.0000025cfa04146=Peroxisome
390.53251.00.0000038cfa04640=Hematopoietic cell lineage
290.59131.00.0000044cfa00980=Metabolism of xenobiotics by cytochrome P450
220.63101.00.000016cfa00140=Steroid hormone biosynthesis
280.56191.00.000027cfa05204=Chemical carcinogenesis
110.8531.00.000033cfa00511=Other glycan degradation
250.57161.00.000052cfa00600=Sphingolipid metabolism
90.9021.00.000074cfa00740=Riboflavin metabolism
230.58141.00.000079cfa00380=Tryptophan metabolism
150.6861.00.000096cfa04977=Vitamin digestion and absorption
220.56171.00.00017cfa00071=Fatty acid metabolism
220.56171.00.00017cfa05150=Staphylococcus aureus infection
260.53271.00.00017cfa00982=Drug metabolism - cytochrome P450
490.44421.00.00018cfa04142=Lysosome
560.42471.00.00024cfa04630=Jak-STAT signaling pathway
340.48351.00.00026cfa03320=PPAR signaling pathway
130.6851.00.00027cfa00531=Glycosaminoglycan degradation
200.56211.00.00043cfa04975=Fat digestion and absorption
220.54241.00.00043cfa00830=Retinol metabolism
190.56201.00.00053cfa00565=Ether lipid metabolism
140.61111.00.00092cfa00591=Linoleic acid metabolism
200.53281.00.0011cfa02010=ABC transporters
220.50321.00.0015cfa00280=Valine, leucine and isoleucine degradation
330.44441.00.0020cfa04974=Protein digestion and absorption
150.56211.00.0022cfa03440=Homologous recombination
140.56191.00.0028cfa00650=Butanoate metabolism
350.42481.00.0035cfa05323=Rheumatoid arthritis
160.52311.00.0043cfa00350=Tyrosine metabolism
160.52311.00.0043cfa05320=Autoimmune thyroid disease
120.57151.00.0044cfa00592=alpha-Linolenic acid metabolism
150.52301.00.0054cfa00760=Nicotinate and nicotinamide metabolism
210.47391.00.0054cfa05144=Malaria
840.36661.00.0059cfa04080=Neuroactive ligand-receptor interaction
160.48331.00.0091cfa05143=African trypanosomiasis
120.52291.00.011cfa00340=Histidine metabolism
140.48340.990.015cfa05330=Allograft rejection
90.56181.00.015cfa04614=Renin-angiotensin system
31.011.00.021cfa00780=Biotin metabolism
350.38560.990.021cfa00240=Pyrimidine metabolism
150.44430.990.030cfa04940=Type I diabetes mellitus
110.48360.990.032cfa00563=Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
290.38540.980.032cfa04512=ECM-receptor interaction
200.41500.980.034cfa04622=RIG-I-like receptor signaling pathway
90.50320.990.037cfa00100=Steroid biosynthesis
100.48370.990.042cfa04950=Maturity onset diabetes of the young
70.54230.990.042cfa03450=Non-homologous end-joining
60.55220.990.055cfa00430=Taurine and hypotaurine metabolism
60.55220.990.055cfa00790=Folate biosynthesis
220.38580.970.060cfa05140=Leishmaniasis
120.43460.970.062cfa00512=Mucin type O-Glycan biosynthesis
30.7540.990.068cfa00061=Fatty acid biosynthesis
30.7540.990.068cfa00232=Caffeine metabolism
230.37620.960.070cfa04115=p53 signaling pathway
290.36640.960.071cfa00564=Glycerophospholipid metabolism
80.47380.980.071cfa00120=Primary bile acid biosynthesis
200.38590.960.074cfa00561=Glycerolipid metabolism
190.38570.960.076cfa04612=Antigen processing and presentation
480.34740.950.076cfa05152=Tuberculosis
180.38530.960.077cfa00510=N-Glycan biosynthesis
21.011.00.077cfa00290=Valine, leucine and isoleucine biosynthesis
160.39520.960.079cfa00500=Starch and sucrose metabolism
160.39520.960.079cfa04621=NOD-like receptor signaling pathway
120.41490.960.080cfa00410=beta-Alanine metabolism
70.47390.970.093cfa00604=Glycosphingolipid biosynthesis - ganglio series
330.34720.940.094cfa05146=Amoebiasis
80.44410.960.097cfa00900=Terpenoid backbone biosynthesis
40.57150.980.099cfa00460=Cyanoamino acid metabolism
40.57150.980.099cfa00750=Vitamin B6 metabolism
120.40510.950.10cfa00052=Galactose metabolism
120.40510.950.10cfa00983=Drug metabolism - other enzymes
90.43460.960.10cfa00040=Pentose and glucuronate interconversions
50.50320.970.11cfa04122=Sulfur relay system
260.35700.930.12cfa04064=NF-kappa B signaling pathway
100.40510.940.13cfa05332=Graft-versus-host disease
170.36630.920.13cfa00480=Glutathione metabolism
210.35680.920.13cfa05133=Pertussis
70.44450.950.13cfa00770=Pantothenate and CoA biosynthesis
120.38610.920.15cfa03410=Base excision repair
210.34710.900.15cfa04976=Bile secretion
150.36650.900.16cfa04978=Mineral absorption
40.50320.960.16cfa00072=Synthesis and degradation of ketone bodies
500.32780.880.16cfa00230=Purine metabolism
80.40510.930.16cfa05310=Asthma
60.43460.940.17cfa00603=Glycosphingolipid biosynthesis - globo series
20.6780.980.19cfa00785=Lipoic acid metabolism
80.38550.900.20cfa00062=Fatty acid elongation
80.38550.900.20cfa03430=Mismatch repair
110.35670.880.22cfa05340=Primary immunodeficiency
120.34730.850.25cfa00260=Glycine, serine and threonine metabolism
400.31810.810.25cfa04145=Phagosome
420.31820.800.25cfa05164=Influenza A
130.33750.830.27cfa00970=Aminoacyl-tRNA biosynthesis
11.011.00.28cfa00472=D-Arginine and D-ornithine metabolism
40.40510.890.29cfa00130=Ubiquinone and other terpenoid-quinone biosynthesis
40.40510.890.29cfa00920=Sulfur metabolism
80.35690.840.29cfa00630=Glyoxylate and dicarboxylate metabolism
360.30850.760.30cfa04514=Cell adhesion molecules (CAMs)
100.33750.810.31cfa00640=Propanoate metabolism
20.50320.930.31cfa00730=Thiamine metabolism
70.35680.840.31cfa01040=Biosynthesis of unsaturated fatty acids
140.32770.780.32cfa05134=Legionellosis
440.30860.740.32cfa05168=Herpes simplex infection
110.32760.790.33cfa00860=Porphyrin and chlorophyll metabolism
120.32790.770.36cfa00620=Pyruvate metabolism
310.30870.700.38cfa05145=Toxoplasmosis
60.33750.790.38cfa00670=One carbon pool by folate
120.31810.730.39cfa04672=Intestinal immune network for IgA production
120.31810.730.39cfa04973=Carbohydrate digestion and absorption
140.30840.720.40cfa00520=Amino sugar and nucleotide sugar metabolism
110.31830.720.41cfa05219=Bladder cancer
230.29880.690.41cfa05222=Small cell lung cancer
80.31810.720.44cfa00601=Glycosphingolipid biosynthesis - lacto and neolacto series
80.31810.720.44cfa04966=Collecting duct acid secretion
50.31800.730.47cfa00533=Glycosaminoglycan biosynthesis - keratan sulfate
10.50320.920.48cfa00300=Lysine biosynthesis
100.29890.670.48cfa03030=DNA replication
120.29900.620.51cfa04930=Type II diabetes mellitus
330.28920.570.51cfa04110=Cell cycle
160.28910.590.53cfa05416=Viral myocarditis
20.33750.790.53cfa00400=Phenylalanine, tyrosine and tryptophan biosynthesis
240.28930.570.53cfa04972=Pancreatic secretion
50.29890.680.53cfa00360=Phenylalanine metabolism
130.27940.530.59cfa00310=Lysine degradation
80.27950.540.62cfa00250=Alanine, aspartate and glutamate metabolism
80.27950.540.62cfa00514=Other types of O-glycan biosynthesis
40.27950.590.63cfa00450=Selenocompound metabolism
40.27950.590.63cfa01210=2-Oxocarboxylic acid metabolism
110.26970.490.64cfa04330=Notch signaling pathway
140.26960.490.64cfa00330=Arginine and proline metabolism
40.251000.530.69cfa00053=Ascorbate and aldarate metabolism
80.251000.450.70cfa00270=Cysteine and methionine metabolism
90.251000.440.70cfa04623=Cytosolic DNA-sensing pathway
180.25980.390.71cfa04210=Apoptosis
50.241070.450.73cfa04140=Regulation of autophagy
140.241040.330.77cfa00010=Glycolysis / Gluconeogenesis
70.231110.380.77cfa05020=Prion diseases
80.241090.370.77cfa00051=Fructose and mannose metabolism
280.251010.280.79cfa04380=Osteoclast differentiation
10.201290.580.80cfa00524=Butirosin and neomycin biosynthesis
60.221160.350.80cfa05216=Thyroid cancer
310.251020.250.81cfa05012=Parkinson's disease
150.231100.270.82cfa04920=Adipocytokine signaling pathway
160.241090.270.82cfa04350=TGF-beta signaling pathway
230.241050.240.82cfa05142=Chagas disease (American trypanosomiasis)
90.221140.290.82cfa03420=Nucleotide excision repair
170.231120.240.83cfa05410=Hypertrophic cardiomyopathy (HCM)
350.241030.220.83cfa05202=Transcriptional misregulation in cancer
100.221160.260.84cfa05014=Amyotrophic lateral sclerosis (ALS)
130.221150.230.85cfa04370=VEGF signaling pathway
260.241080.200.86cfa05160=Hepatitis C
310.241060.190.86cfa00190=Oxidative phosphorylation
760.25990.170.86cfa04151=PI3K-Akt signaling pathway
70.211270.240.87cfa04742=Taste transduction
150.221180.180.88cfa05218=Melanoma
140.221220.170.90cfa05412=Arrhythmogenic right ventricular cardiomyopathy (ARVC)
170.221200.150.90cfa05414=Dilated cardiomyopathy
40.181400.230.90cfa00534=Glycosaminoglycan biosynthesis - heparan sulfate / heparin
50.191360.200.90cfa00030=Pentose phosphate pathway
210.221170.130.91cfa04726=Serotonergic synapse
150.211240.130.92cfa03008=Ribosome biogenesis in eukaryotes
40.171450.190.92cfa04320=Dorso-ventral axis formation
70.191340.160.92cfa04960=Aldosterone-regulated sodium reabsorption
220.221210.100.93cfa04066=HIF-1 signaling pathway
240.221190.110.93cfa04670=Leukocyte transendothelial migration
280.221160.100.93cfa05161=Hepatitis B
430.231130.0950.93cfa04144=Endocytosis
140.201280.110.94cfa05220=Chronic myeloid leukemia
50.171460.150.94cfa04744=Phototransduction
60.181420.130.94cfa04130=SNARE interactions in vesicular transport
120.191330.0790.96cfa05211=Renal cell carcinoma
230.211250.0670.96cfa05162=Measles
40.151540.110.96cfa03020=RNA polymerase
100.181410.0630.97cfa00562=Inositol phosphate metabolism
40.141610.0790.97cfa04710=Circadian rhythm
100.171460.0470.98cfa05210=Colorectal cancer
150.181390.0340.98cfa04914=Progesterone-mediated oocyte maturation
200.191330.0280.98cfa04270=Vascular smooth muscle contraction
400.211230.0320.98cfa04510=Focal adhesion
80.161500.0480.98cfa05213=Endometrial cancer
100.151540.0150.99cfa05212=Pancreatic cancer
100.161490.0290.99cfa04260=Cardiac muscle contraction
100.161530.0210.99cfa05214=Glioma
130.161510.0120.99cfa05215=Prostate cancer
140.171480.0160.99cfa04012=ErbB signaling pathway
140.181440.0250.99cfa04620=Toll-like receptor signaling pathway
150.171460.0170.99cfa04650=Natural killer cell mediated cytotoxicity
170.181430.0140.99cfa04114=Oocyte meiosis
240.181370.0100.99cfa04910=Insulin signaling pathway
320.201300.0150.99cfa05010=Alzheimer's disease
330.201310.0100.99cfa05016=Huntington's disease
80.151580.0200.99cfa04730=Long-term depression
90.151570.0160.99cfa03018=RNA degradation
90.151570.0160.99cfa04664=Fc epsilon RI signaling pathway
00.02040.381.0cfa00471=D-Glutamine and D-glutamate metabolism
10.0362010.00141.0cfa00020=Citrate cycle (TCA cycle)
10.0451980.00761.0cfa03060=Protein export
10.0531960.0181.0cfa04964=Proximal tubule bicarbonate reclamation
10.0591940.0301.0cfa00532=Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
100.131710.00171.0cfa04912=GnRH signaling pathway
100.131720.00141.0cfa04070=Phosphatidylinositol signaling system
100.141630.00531.0cfa05100=Bacterial invasion of epithelial cells
110.0871861.6E-71.0cfa04310=Wnt signaling pathway
110.131700.00121.0cfa04666=Fc gamma R-mediated phagocytosis
110.151560.00871.0cfa04970=Salivary secretion
130.0831871.9E-91.0cfa05034=Alcoholism
130.131670.000671.0cfa04660=T cell receptor signaling pathway
150.121730.0000581.0cfa04360=Axon guidance
150.121730.0000581.0cfa04530=Tight junction
150.121750.0000101.0cfa04390=Hippo signaling pathway
150.141640.000651.0cfa04722=Neurotrophin signaling pathway
180.131690.0000421.0cfa03010=Ribosome
180.141650.000151.0cfa04120=Ubiquitin mediated proteolysis
180.161520.00351.0cfa05322=Systemic lupus erythematosus
20.0162038.1E-151.0cfa03040=Spliceosome
20.0282023.3E-81.0cfa03015=mRNA surveillance pathway
260.191350.00881.0cfa03013=RNA transport
270.151590.0000191.0cfa05203=Viral carcinogenesis
280.171450.00181.0cfa04141=Protein processing in endoplasmic reticulum
280.171480.000871.0cfa04062=Chemokine signaling pathway
290.171470.000941.0cfa05169=Epstein-Barr virus infection
30.0382005.6E-81.0cfa04727=GABAergic synapse
30.0521970.0000141.0cfa04720=Long-term potentiation
30.0671890.000451.0cfa04961=Endocrine and other factor-regulated calcium reabsorption
30.0701880.000761.0cfa04962=Vasopressin-regulated water reabsorption
30.0911840.00901.0cfa05033=Nicotine addiction
300.151550.0000381.0cfa04810=Regulation of actin cytoskeleton
310.181380.00401.0cfa04020=Calcium signaling pathway
340.141600.00000111.0cfa04010=MAPK signaling pathway
40.0611920.0000101.0cfa04971=Gastric acid secretion
40.0981820.00501.0cfa03022=Basal transcription factors
460.191320.00171.0cfa05166=HTLV-I infection
50.0431996.9E-111.0cfa04728=Dopaminergic synapse
50.0561951.4E-71.0cfa04723=Retrograde endocannabinoid signaling
50.0621900.00000111.0cfa04540=Gap junction
50.111770.00821.0cfa05030=Cocaine addiction
50.111800.00661.0cfa03050=Proteasome
50.121750.0101.0cfa04340=Hedgehog signaling pathway
60.0591933.4E-81.0cfa04725=Cholinergic synapse
60.0611917.4E-81.0cfa04724=Glutamatergic synapse
60.101810.00121.0cfa05031=Amphetamine addiction
60.121740.00841.0cfa05217=Basal cell carcinoma
60.121760.00451.0cfa05223=Non-small cell lung cancer
620.211260.00381.0cfa05200=Pathways in cancer
660.141621.1E-111.0cfa04740=Olfactory transduction
70.111780.00161.0cfa04520=Adherens junction
70.131660.0121.0cfa05221=Acute myeloid leukemia
80.0901850.0000141.0cfa04713=Circadian entrainment
80.0901850.0000141.0cfa04916=Melanogenesis
80.0951830.0000441.0cfa05032=Morphine addiction
80.111790.000751.0cfa05132=Salmonella infection
80.131680.00681.0cfa04150=mTOR signaling pathway
80.131680.00681.0cfa04721=Synaptic vesicle cycle
90.141610.00951.0cfa04662=B cell receptor signaling pathway
320.6871.01.2E-8cfa03460=Fanconi anemia pathway
340.6491.04.2E-8cfa00590=Arachidonic acid metabolism
850.45401.04.9E-7cfa04060=Cytokine-cytokine receptor interaction
340.60121.05.3E-7cfa04610=Complement and coagulation cascades
4080.38601.08.6E-11cfa01100=Metabolic pathways

--

Douglas R. Cavener
Professor and Head
Department of Biology
110 Life Science Building
Pennsylvania State University
University Park, PA 16802

(814) 865-4562     Dept Office
(814) 865-9790 Lab Office
(814) 865-9131  Fax






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Re: problem with scientific notation sorting and filtering in galaxy

Dave Clements-3
Hi Douglas,

I encourage you and anyone else that has encountered this error to up-vote this issue in the Galaxy Trello board:


That will help us prioritize work.  Thanks for reporting this.

Dave C


On Thu, Jan 30, 2014 at 10:24 AM, Douglas Cavener <[hidden email]> wrote:
I have found that numbers in scientific notation (e.g 9.8E-9) are incorrectly sorted or filtered by Galaxy. Looks like the negative exponent is ignored and so if you sorting something like P values (see example below) then you find these ordered above P=1 instead at the other end of the list where P is near zero. In the example below a KEGG list is ordered on column 5 in asending order by galaxy. If you scroll to the bottom of the list, however, you will see the smallest numbers all of which are in scientific notation. I should note that I can can copy this into excel and excel will properly sort scientific notation. So this seems to be a specific problem with Galaxy. I found this problem with both filtering and sorting functions of Galaxy. 
Doug Cavener

410.53261.00.0000025cfa04146=Peroxisome
390.5325 1.00.0000038cfa04640=Hematopoietic cell lineage
290.59131.00.0000044cfa00980=Metabolism of xenobiotics by cytochrome P450
220.63101.00.000016cfa00140=Steroid hormone biosynthesis
280.56191.00.000027cfa05204=Chemical carcinogenesis
110.8531.00.000033cfa00511=Other glycan degradation
250.57161.00.000052cfa00600=Sphingolipid metabolism
90.9021.00.000074cfa00740=Riboflavin metabolism
230.58141.00.000079cfa00380=Tryptophan metabolism
150.6861.00.000096cfa04977=Vitamin digestion and absorption
220.56171.00.00017cfa00071=Fatty acid metabolism
220.56171.00.00017cfa05150=Staphylococcus aureus infection
260.53271.00.00017cfa00982=Drug metabolism - cytochrome P450
490.44421.00.00018cfa04142=Lysosome
560.42471.00.00024cfa04630=Jak-STAT signaling pathway
340.48351.00.00026cfa03320=PPAR signaling pathway
130.6851.00.00027cfa00531=Glycosaminoglycan degradation
200.56211.00.00043cfa04975=Fat digestion and absorption
220.54241.00.00043cfa00830=Retinol metabolism
190.56201.00.00053cfa00565=Ether lipid metabolism
140.61111.00.00092cfa00591=Linoleic acid metabolism
200.53281.00.0011cfa02010=ABC transporters
220.50321.00.0015cfa00280=Valine, leucine and isoleucine degradation
330.44441.00.0020cfa04974=Protein digestion and absorption
150.56211.00.0022cfa03440=Homologous recombination
140.56191.00.0028cfa00650=Butanoate metabolism
350.42481.00.0035cfa05323=Rheumatoid arthritis
160.52311.00.0043cfa00350=Tyrosine metabolism
160.52311.00.0043cfa05320=Autoimmune thyroid disease
120.57151.00.0044cfa00592=alpha-Linolenic acid metabolism
150.52301.00.0054cfa00760=Nicotinate and nicotinamide metabolism
210.47391.00.0054cfa05144=Malaria
840.36661.00.0059cfa04080=Neuroactive ligand-receptor interaction
160.48331.00.0091cfa05143=African trypanosomiasis
120.52291.00.011cfa00340=Histidine metabolism
140.48340.990.015cfa05330=Allograft rejection
90.56181.00.015cfa04614=Renin-angiotensin system
31.011.00.021cfa00780=Biotin metabolism
350.38560.990.021cfa00240=Pyrimidine metabolism
15 0.44430.990.030cfa04940=Type I diabetes mellitus
110.48360.990.032cfa00563=Glycosylphosphatidylinositol(GPI)-anchor biosynthesis
290.38540.980.032cfa04512=ECM-receptor interaction
200.41500.980.034cfa04622=RIG-I-like receptor signaling pathway
90.50320.990.037cfa00100=Steroid biosynthesis
100.48370.990.042cfa04950=Maturity onset diabetes of the young
70.54230.990.042cfa03450=Non-homologous end-joining
60.55220.990.055cfa00430=Taurine and hypotaurine metabolism
60.55220.990.055cfa00790=Folate biosynthesis
220.38580.970.060cfa05140=Leishmaniasis
120.43460.970.062cfa00512=Mucin type O-Glycan biosynthesis
30.7540.990.068cfa00061=Fatty acid biosynthesis
30.7540.990.068cfa00232=Caffeine metabolism
230.37620.960.070cfa04115=p53 signaling pathway
290.36640.960.071cfa00564=Glycerophospholipid metabolism
80.47380.980.071cfa00120=Primary bile acid biosynthesis
200.38590.960.074cfa00561=Glycerolipid metabolism
190.38570.960.076cfa04612=Antigen processing and presentation
480.34740.950.076cfa05152=Tuberculosis
180.38530.960.077cfa00510=N-Glycan biosynthesis
21.011.00.077cfa00290=Valine, leucine and isoleucine biosynthesis
160.39520.960.079cfa00500=Starch and sucrose metabolism
160.39520.960.079cfa04621=NOD-like receptor signaling pathway
120.41490.960.080cfa00410=beta-Alanine metabolism
70.47390.970.093cfa00604=Glycosphingolipid biosynthesis - ganglio series
330.34720.940.094cfa05146=Amoebiasis
80.44410.960.097cfa00900=Terpenoid backbone biosynthesis
40.57150.980.099cfa00460=Cyanoamino acid metabolism
40.57150.980.099cfa00750=Vitamin B6 metabolism
120.40510.950.10cfa00052=Galactose metabolism
120.40510.950.10cfa00983=Drug metabolism - other enzymes
90.43460.960.10cfa00040=Pentose and glucuronate interconversions
50.50320.970.11cfa04122=Sulfur relay system
260.35700.930.12cfa04064=NF-kappa B signaling pathway
100.40510.940.13cfa05332=Graft-versus-host disease
170.36630.920.13cfa00480=Glutathione metabolism
210.35680.920.13cfa05133=Pertussis
70.44450.950.13cfa00770=Pantothenate and CoA biosynthesis
120.38610.920.15cfa03410=Base excision repair
210.34710.900.15cfa04976=Bile secretion
15 0.36650.900.16cfa04978=Mineral absorption
40.50320.960.16cfa00072=Synthesis and degradation of ketone bodies
500.32780.880.16cfa00230=Purine metabolism
80.40510.930.16cfa05310=Asthma
60.43 460.940.17cfa00603=Glycosphingolipid biosynthesis - globo series
20.6780.980.19cfa00785=Lipoic acid metabolism
80.38550.900.20cfa00062=Fatty acid elongation
80.38550.900.20cfa03430=Mismatch repair
11 0.35670.880.22cfa05340=Primary immunodeficiency
120.34730.850.25cfa00260=Glycine, serine and threonine metabolism
400.31810.810.25cfa04145=Phagosome
420.31820.800.25cfa05164=Influenza A
130.33 750.830.27cfa00970=Aminoacyl-tRNA biosynthesis
11.011.00.28cfa00472=D-Arginine and D-ornithine metabolism
4 0.40510.890.29cfa00130=Ubiquinone and other terpenoid-quinone biosynthesis
40.40510.890.29cfa00920=Sulfur metabolism
80.35690.840.29cfa00630=Glyoxylate and dicarboxylate metabolism
360.30850.760.30cfa04514=Cell adhesion molecules (CAMs)
100.33750.810.31cfa00640=Propanoate metabolism
20.50320.930.31cfa00730=Thiamine metabolism
70.35680.840.31cfa01040=Biosynthesis of unsaturated fatty acids
140.32770.780.32cfa05134=Legionellosis
440.30860.740.32cfa05168=Herpes simplex infection
110.32760.790.33cfa00860=Porphyrin and chlorophyll metabolism
120.32790.770.36cfa00620=Pyruvate metabolism
310.30870.700.38cfa05145=Toxoplasmosis
60.33750.790.38cfa00670=One carbon pool by folate
120.31810.730.39cfa04672=Intestinal immune network for IgA production
120.31810.730.39cfa04973=Carbohydrate digestion and absorption
140.30840.720.40cfa00520=Amino sugar and nucleotide sugar metabolism
110.31830.720.41cfa05219=Bladder cancer
230.29880.690.41cfa05222=Small cell lung cancer
80.31810.720.44cfa00601=Glycosphingolipid biosynthesis - lacto and neolacto series
80.31810.720.44cfa04966=Collecting duct acid secretion
50.31800.730.47cfa00533=Glycosaminoglycan biosynthesis - keratan sulfate
10.50320.920.48cfa00300=Lysine biosynthesis
100.29890.670.48cfa03030=DNA replication
120.29900.620.51cfa04930=Type II diabetes mellitus
330.28920.570.51cfa04110=Cell cycle
160.28910.590.53cfa05416=Viral myocarditis
2 0.33750.790.53cfa00400=Phenylalanine, tyrosine and tryptophan biosynthesis
240.28930.570.53cfa04972=Pancreatic secretion
50.29890.680.53cfa00360=Phenylalanine metabolism
130.27940.530.59cfa00310=Lysine degradation
80.27950.540.62cfa00250=Alanine, aspartate and glutamate metabolism
80.27950.540.62cfa00514=Other types of O-glycan biosynthesis
40.27950.590.63cfa00450=Selenocompound metabolism
40.27950.590.63cfa01210=2-Oxocarboxylic acid metabolism
110.26970.490.64cfa04330=Notch signaling pathway
140.26960.490.64cfa00330=Arginine and proline metabolism
40.251000.530.69cfa00053=Ascorbate and aldarate metabolism
80.251000.450.70cfa00270=Cysteine and methionine metabolism
90.251000.440.70cfa04623=Cytosolic DNA-sensing pathway
180.25980.390.71cfa04210=Apoptosis
50.241070.450.73cfa04140=Regulation of autophagy
140.241040.330.77cfa00010=Glycolysis / Gluconeogenesis
70.231110.380.77cfa05020=Prion diseases
80.241090.370.77cfa00051=Fructose and mannose metabolism
280.251010.280.79cfa04380=Osteoclast differentiation
10.201290.580.80cfa00524=Butirosin and neomycin biosynthesis
60.221160.350.80cfa05216=Thyroid cancer
310.251020.250.81cfa05012=Parkinson's disease
150.231100.270.82cfa04920=Adipocytokine signaling pathway
160.241090.270.82cfa04350=TGF-beta signaling pathway
230.241050.240.82cfa05142=Chagas disease (American trypanosomiasis)
90.221140.290.82cfa03420=Nucleotide excision repair
170.231120.240.83cfa05410=Hypertrophic cardiomyopathy (HCM)
350.241030.220.83cfa05202=Transcriptional misregulation in cancer
100.221160.260.84cfa05014=Amyotrophic lateral sclerosis (ALS)
130.221150.230.85cfa04370=VEGF signaling pathway
260.241080.200.86cfa05160=Hepatitis C
310.241060.190.86cfa00190=Oxidative phosphorylation
760.25990.170.86cfa04151=PI3K-Akt signaling pathway
70.211270.240.87cfa04742=Taste transduction
150.221180.180.88cfa05218=Melanoma
140.221220.170.90cfa05412=Arrhythmogenic right ventricular cardiomyopathy (ARVC)
170.221200.150.90cfa05414=Dilated cardiomyopathy
40.181400.230.90cfa00534=Glycosaminoglycan biosynthesis - heparan sulfate / heparin
50.191360.200.90cfa00030=Pentose phosphate pathway
210.221170.130.91cfa04726=Serotonergic synapse
150.211240.130.92cfa03008=Ribosome biogenesis in eukaryotes
40.171450.190.92cfa04320=Dorso-ventral axis formation
70.191340.160.92cfa04960=Aldosterone-regulated sodium reabsorption
220.221210.100.93cfa04066=HIF-1 signaling pathway
240.221190.110.93cfa04670=Leukocyte transendothelial migration
280.221160.100.93cfa05161=Hepatitis B
430.231130.0950.93cfa04144=Endocytosis
140.201280.110.94cfa05220=Chronic myeloid leukemia
50.171460.150.94cfa04744=Phototransduction
60.181420.130.94cfa04130=SNARE interactions in vesicular transport
120.191330.0790.96cfa05211=Renal cell carcinoma
230.211250.0670.96cfa05162=Measles
4 0.151540.110.96cfa03020=RNA polymerase
100.181410.0630.97cfa00562=Inositol phosphate metabolism
4 0.141610.0790.97cfa04710=Circadian rhythm
100.171460.0470.98cfa05210=Colorectal cancer
150.18 1390.0340.98cfa04914=Progesterone-mediated oocyte maturation
200.191330.0280.98cfa04270=Vascular smooth muscle contraction
400.211230.0320.98cfa04510=Focal adhesion
80.161500.0480.98cfa05213=Endometrial cancer
10 0.151540.0150.99cfa05212=Pancreatic cancer
100.161490.0290.99cfa04260=Cardiac muscle contraction
10 0.161530.0210.99cfa05214=Glioma
130.161510.0120.99cfa05215=Prostate cancer
140.17148 0.0160.99cfa04012=ErbB signaling pathway
140.181440.0250.99cfa04620=Toll-like receptor signaling pathway
150.17 1460.0170.99cfa04650=Natural killer cell mediated cytotoxicity
170.181430.0140.99cfa04114=Oocyte meiosis
24 0.181370.0100.99cfa04910=Insulin signaling pathway
320.201300.0150.99cfa05010=Alzheimer's disease
330.201310.0100.99cfa05016=Huntington's disease
80.151580.0200.99cfa04730=Long-term depression
90.151570.0160.99cfa03018=RNA degradation
90.151570.0160.99cfa04664=Fc epsilon RI signaling pathway
00.02040.381.0cfa00471=D-Glutamine and D-glutamate metabolism
10.0362010.00141.0cfa00020=Citrate cycle (TCA cycle)
10.0451980.00761.0cfa03060=Protein export
10.0531960.0181.0cfa04964=Proximal tubule bicarbonate reclamation
10.0591940.0301.0cfa00532=Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
100.131710.0017 1.0cfa04912=GnRH signaling pathway
100.131720.00141.0cfa04070=Phosphatidylinositol signaling system
100.14163 0.00531.0cfa05100=Bacterial invasion of epithelial cells
110.0871861.6E-71.0cfa04310=Wnt signaling pathway
110.13 1700.00121.0cfa04666=Fc gamma R-mediated phagocytosis
110.151560.00871.0cfa04970=Salivary secretion
13 0.0831871.9E-91.0cfa05034=Alcoholism
130.131670.000671.0cfa04660=T cell receptor signaling pathway
15 0.121730.0000581.0cfa04360=Axon guidance
150.121730.0000581.0cfa04530=Tight junction
150.12 1750.0000101.0cfa04390=Hippo signaling pathway
150.141640.000651.0cfa04722=Neurotrophin signaling pathway
18 0.131690.0000421.0cfa03010=Ribosome
180.141650.000151.0cfa04120=Ubiquitin mediated proteolysis
18 0.161520.00351.0cfa05322=Systemic lupus erythematosus
20.0162038.1E-151.0cfa03040=Spliceosome
2 0.0282023.3E-81.0cfa03015=mRNA surveillance pathway
260.191350.00881.0cfa03013=RNA transport
270.15 1590.0000191.0cfa05203=Viral carcinogenesis
280.171450.00181.0cfa04141=Protein processing in endoplasmic reticulum
280.171480.000871.0cfa04062=Chemokine signaling pathway
290.171470.000941.0cfa05169=Epstein-Barr virus infection
30.0382005.6E-81.0cfa04727=GABAergic synapse
30.0521970.0000141.0cfa04720=Long-term potentiation
30.0671890.000451.0cfa04961=Endocrine and other factor-regulated calcium reabsorption
30.0701880.000761.0 cfa04962=Vasopressin-regulated water reabsorption
30.0911840.00901.0cfa05033=Nicotine addiction
300.151550.000038 1.0cfa04810=Regulation of actin cytoskeleton
310.181380.00401.0cfa04020=Calcium signaling pathway
340.14160 0.00000111.0cfa04010=MAPK signaling pathway
40.0611920.0000101.0cfa04971=Gastric acid secretion
40.098 1820.00501.0cfa03022=Basal transcription factors
460.191320.00171.0cfa05166=HTLV-I infection
50.043 1996.9E-111.0cfa04728=Dopaminergic synapse
50.0561951.4E-71.0cfa04723=Retrograde endocannabinoid signaling
5 0.0621900.00000111.0cfa04540=Gap junction
50.111770.00821.0cfa05030=Cocaine addiction
50.11 1800.00661.0cfa03050=Proteasome
50.121750.0101.0cfa04340=Hedgehog signaling pathway
60.059193 3.4E-81.0cfa04725=Cholinergic synapse
60.0611917.4E-81.0cfa04724=Glutamatergic synapse
60.10181 0.00121.0cfa05031=Amphetamine addiction
60.121740.00841.0cfa05217=Basal cell carcinoma
60.121760.0045 1.0cfa05223=Non-small cell lung cancer
620.211260.00381.0cfa05200=Pathways in cancer
660.141621.1E-11 1.0cfa04740=Olfactory transduction
70.111780.00161.0cfa04520=Adherens junction
70.131660.012 1.0 cfa05221=Acute myeloid leukemia
80.0901850.0000141.0cfa04713=Circadian entrainment
80.0901850.0000141.0 cfa04916=Melanogenesis
80.0951830.0000441.0cfa05032=Morphine addiction
80.111790.000751.0cfa05132=Salmonella infection
80.131680.00681.0cfa04150=mTOR signaling pathway
80.131680.00681.0cfa04721=Synaptic vesicle cycle
90.141610.00951.0cfa04662=B cell receptor signaling pathway
320.6871.01.2E-8cfa03460=Fanconi anemia pathway
340.6491.04.2E-8cfa00590=Arachidonic acid metabolism
850.45401.04.9E-7cfa04060=Cytokine-cytokine receptor interaction
340.60121.05.3E-7cfa04610=Complement and coagulation cascades
4080.38601.08.6E-11cfa01100=Metabolic pathways

--

Douglas R. Cavener
Professor and Head
Department of Biology
110 Life Science Building
Pennsylvania State University
University Park, PA 16802

(814) 865-4562     Dept Office
(814) 865-9790 Lab Office
(814) 865-9131  Fax






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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

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