get data through FTP site

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get data through FTP site

Benoit HENNUY
Hello,
I uploaded (on  Oct, 25)  data through FTP site and I was not able to
retreiven them to include them in a history. I suppose that the files
should appeared in the FTP list under the Get data page.
THese data are named "P2 fastq .gz" files that I wold like to use in RNA
Seq workflow.

Thank you to help me to be able to use these data.

Best regards,

Benoit HENNUY
GIGA Genomics
University of Liege
Belgium

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Re: get data through FTP site

Jen Hillman-Jackson
Hello,

Please try an alternate name/compression format. The details for
supported file names (no spaces) and compression types (.gzip, .bz,
bzip2, and single-file .zip) are here:
http://galaxyproject.org/Learn/Upload%20via%20FTP

Please let us know if we can help again,

Best,

Jen
Galaxy team

On 10/26/11 6:25 AM, Benoit HENNUY wrote:

> Hello,
> I uploaded (on Oct, 25) data through FTP site and I was not able to
> retreiven them to include them in a history. I suppose that the files
> should appeared in the FTP list under the Get data page.
> THese data are named "P2 fastq .gz" files that I wold like to use in RNA
> Seq workflow.
>
> Thank you to help me to be able to use these data.
>
> Best regards,
>
> Benoit HENNUY
> GIGA Genomics
> University of Liege
> Belgium
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org. Please keep all replies on the list by
> using "reply all" in your mail client. For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
> http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
> http://lists.bx.psu.edu/

--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support

Jennifer Hillman-Jackson
http://galaxyproject.org
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Re: get data through FTP site

LOURO Bruno
Hi,
I faced a similar problem with getting data into history, I tried directly and via FTP. Both cases, the files being loaded to history ended up being incompleted. The upload to FTP was OK.
My files were .bzip2.

Cheers,
Bruno
________________________________________
De: [hidden email] [[hidden email]] Em Nome De Jennifer Jackson [[hidden email]]
Enviado: quinta-feira, 27 de Outubro de 2011 21:23
Para: Benoit HENNUY
Cc: [hidden email]
Assunto: Re: [galaxy-user] get data through FTP site

Hello,

Please try an alternate name/compression format. The de tails for
supported file names (no spaces) and compression types (.gzip, .bz,
bzip2, and single-file .zip) are here:
http://galaxyproject.org/Learn/Upload%20via%20FTP

Please let us know if we can help again,

Best,

Jen
Galaxy team

On 10/26/11 6:25 AM, Benoit HENNUY wrote:

> Hello,
> I uploaded (on Oct, 25) data through FTP site and I was not able to
> retreiven them to include them in a history. I suppose that the files
> should appeared in the FTP list under the Get data page.
> THese data are named "P2 fastq .gz" files that I wold like to use in RNA
> Seq workflow.
>
> Thank you to help me to be able to use these data.
>
> Best regards,
>
> Benoit HENNUY
> GIGA Genomics
> University of Liege
> Belgium
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org. Please keep all replies on the list by
> using "reply all" in your mail client. For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
> http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
> http://lists.bx.psu.edu/

--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

--
The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.



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Re: get data through FTP site

Jen Hillman-Jackson
Hello,

Would one or both of you have time to try this again? If the transfer
from the FTP area to a history fails (or is incomplete) again, please
let us know and we can examine. If the Galaxy account you are using is
linked to a different email, please note that in the reply.

Thanks for the help,

Jen
Galaxy team

On 10/27/11 7:55 PM, LOURO Bruno wrote:

> Hi,
> I faced a similar problem with getting data into history, I tried directly and via FTP. Both cases, the files being loaded to history ended up being incompleted. The upload to FTP was OK.
> My files were .bzip2.
>
> Cheers,
> Bruno
> ________________________________________
> De: [hidden email] [[hidden email]] Em Nome De Jennifer Jackson [[hidden email]]
> Enviado: quinta-feira, 27 de Outubro de 2011 21:23
> Para: Benoit HENNUY
> Cc: [hidden email]
> Assunto: Re: [galaxy-user] get data through FTP site
>
> Hello,
>
> Please try an alternate name/compression format. The de tails for
> supported file names (no spaces) and compression types (.gzip, .bz,
> bzip2, and single-file .zip) are here:
> http://galaxyproject.org/Learn/Upload%20via%20FTP
>
> Please let us know if we can help again,
>
> Best,
>
> Jen
> Galaxy team
>
> On 10/26/11 6:25 AM, Benoit HENNUY wrote:
>> Hello,
>> I uploaded (on Oct, 25) data through FTP site and I was not able to
>> retreiven them to include them in a history. I suppose that the files
>> should appeared in the FTP list under the Get data page.
>> THese data are named "P2 fastq .gz" files that I wold like to use in RNA
>> Seq workflow.
>>
>> Thank you to help me to be able to use these data.
>>
>> Best regards,
>>
>> Benoit HENNUY
>> GIGA Genomics
>> University of Liege
>> Belgium
>> ___________________________________________________________
>> The Galaxy User list should be used for the discussion of
>> Galaxy analysis and other features on the public server
>> at usegalaxy.org. Please keep all replies on the list by
>> using "reply all" in your mail client. For discussion of
>> local Galaxy instances and the Galaxy source code, please
>> use the Galaxy Development list:
>>
>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>
>> To manage your subscriptions to this and other Galaxy lists,
>> please use the interface at:
>>
>> http://lists.bx.psu.edu/
>
> --
> Jennifer Jackson
> http://usegalaxy.org
> http://galaxyproject.org/wiki/Support
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>    http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>    http://lists.bx.psu.edu/
>

--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support

Jennifer Hillman-Jackson
http://galaxyproject.org