They also have a mailing list (the link is on the right menu bar of
their web page).
Hopefully you have already found these answers or the tool authors can
offer help beyond what is documented (the tool option documentation is
what Galaxy has on the tool form),
On 10/12/11 4:00 AM, dongdong zhaoweiming wrote:
> It's the first time for me to use cufflinks in galaxy, two choices
> confused me as follows:
> Perform Bias Correction:
> Bias detection and correction can significantly improve accuracy of
> transcript abundance estimates.
> Set Parameters for Paired-end Reads? (not recommended):
> what is the Bias correction and how does it work? And for "set
> parameters for paired-end reads? (not recommended)" ,what would be
> important difference between recommended and not recommended?
> Thanks a lot!
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