bigWig to wig conversion

classic Classic list List threaded Threaded
2 messages Options
Reply | Threaded
Open this post in threaded view
|

bigWig to wig conversion

Sébastien Vigneau
Hi,

I am wondering if it is possible to convert from bigWig to wig format in Galaxy.

Sincerely,

Sébastien Vigneau

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/
Reply | Threaded
Open this post in threaded view
|

Re: bigWig to wig conversion

Jen Hillman-Jackson
Hello,

There is no Galaxy wrapper yet for this function. But I created a ticket for it to be considered, you can follow it here: https://trello.com/c/bnht6xDi
If you program or if anyone else reading this does, a wrapper for the tool can be submitted to the Tool Shed, if created.
http://usegalaxy.org/toolshed

Meanwhile, the tool can be download as a compiled executable from UCSC and run line command.
http://hgdownload.cse.ucsc.edu/downloads.html#source_downloads
http://genome.ucsc.edu/contacts.html

Good luck!

Jen
Galaxy team

On 1/2/14 1:40 PM, Sébastien Vigneau wrote:
Hi,

I am wondering if it is possible to convert from bigWig to wig format in Galaxy.

Sincerely,

Sébastien Vigneau


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

-- 
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/
Jennifer Hillman-Jackson
http://galaxyproject.org