Local instance data upload

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Local instance data upload

Luciano Cosme-2
Hi,
    I am trying to set up a ftp server to upload data in my local  
instance of galaxy but I am having some problems with postgres. I  
spent a lot of time on it already and could not solve it yet (well I  
am a biologist). It seems pretty straight forward process at http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP 
, but I it is just not working. I am running it on Ubuntu 11.10, I  
have a ftp server set up already, but I can't fix the postgres. Is  
there any other way to upload data to the local instance without using  
a ftp server? Well I have all files in same computer where I have  
galaxy, using a ftp server seems to be a extra step. The only other  
way that I thought was to upload the compressed files, but I have  
around 15 files for every sample (14 sample total) and I would have to  
concatenate them later on.
Thank you.

Luciano Cosme



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Re: Local instance data upload

Jen Hillman-Jackson
Hello Luciano,

Data can be loaded into a Data Library directly from the file system.
Using your admin account, first make changes in the universe_wsgi.ini
file in the section "# -- Data Libraries":

https://bitbucket.org/galaxy/galaxy-central/src/c528fab7ea8c/universe_wsgi.ini.sample

Then follow the instructions in this wiki set:
http://galaxyproject.org/wiki/Admin/Data%20Libraries/

Start here:
http://galaxyproject.org/wiki/Admin/Data Libraries/Uploading Library Files

Hopefully this helps.

Best,

Jen
Galaxy team

On 10/26/11 1:30 PM, Luciano Cosme wrote:

> Hi,
> I am trying to set up a ftp server to upload data in my local instance
> of galaxy but I am having some problems with postgres. I spent a lot of
> time on it already and could not solve it yet (well I am a biologist).
> It seems pretty straight forward process at
> http://wiki.g2.bx.psu.edu/Admin/Config/Upload%20via%20FTP, but I it is
> just not working. I am running it on Ubuntu 11.10, I have a ftp server
> set up already, but I can't fix the postgres. Is there any other way to
> upload data to the local instance without using a ftp server? Well I
> have all files in same computer where I have galaxy, using a ftp server
> seems to be a extra step. The only other way that I thought was to
> upload the compressed files, but I have around 15 files for every sample
> (14 sample total) and I would have to concatenate them later on.
> Thank you.
>
> Luciano Cosme
>
>
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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support

Jennifer Hillman-Jackson
http://galaxyproject.org