Job of format conversion waiting for over 5 days

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Job of format conversion waiting for over 5 days

Eduardo Fox
Hello,

Please I would like to know if it would be normal of a job to be
queued for several days? It is a SAM to BAM conversion, and it has
been waiting for over 5 days to run. I understand that the SAM file is
pretty large but other similar conversions I made on the server
recently were done within few minutes.

Thanks!

--
Eduardo G. P. Fox

http://eduardofox.blogspot.com.br/
http://www.mendeley.com/profiles/eduardo-fox/
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Re: Job of format conversion waiting for over 5 days

Eduardo Fox
2014-03-31 11:29 GMT+02:00 Eduardo Fox <[hidden email]>:

> Hello,
>
> Please I would like to know if it would be normal of a job to be
> queued for several days? It is a SAM to BAM conversion, and it has
> been waiting for over 5 days to run. I understand that the SAM file is
> pretty large but other similar conversions I made on the server
> recently were done within few minutes.
>
> Thanks!
>
> --
> Eduardo G. P. Fox
>
> http://eduardofox.blogspot.com.br/
> http://www.mendeley.com/profiles/eduardo-fox/



--
Eduardo G. P. Fox

http://eduardofox.blogspot.com.br/
http://www.mendeley.com/profiles/eduardo-fox/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

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Re: Job of format conversion waiting for over 5 days

Nate Coraor
Hi Eduardo,

I believe the job in question is not running because one of its inputs (#101) failed to have metadata set properly. This situation can be fixed by using the 'auto-detect' button on the failed dataset.

--nate


On Mon, Mar 31, 2014 at 5:20 PM, Eduardo Fox <[hidden email]> wrote:
2014-03-31 11:29 GMT+02:00 Eduardo Fox <[hidden email]>:
> Hello,
>
> Please I would like to know if it would be normal of a job to be
> queued for several days? It is a SAM to BAM conversion, and it has
> been waiting for over 5 days to run. I understand that the SAM file is
> pretty large but other similar conversions I made on the server
> recently were done within few minutes.
>
> Thanks!
>
> --
> Eduardo G. P. Fox
>
> http://eduardofox.blogspot.com.br/
> http://www.mendeley.com/profiles/eduardo-fox/



--
Eduardo G. P. Fox

http://eduardofox.blogspot.com.br/
http://www.mendeley.com/profiles/eduardo-fox/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

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