[Galaxy-user] error in plotting tools for Galaxy

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[Galaxy-user] error in plotting tools for Galaxy

Ross Hardison
The histogram-plotting tool and the scatter plot tool in Galaxy now return  files that looks like pdf instructions but does not display as a graph.

Here is the "traceback":

tion Error
An unexpected error occurred in the Galaxy framework. The error has been logged.
<A href="javascript:expand('traceback')">Show traceback? (for developers)

 

 

NameError
Python 2.4.2: /usr/bin/python2.4
Mon Feb 13 14:51:32 2006

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.



 /var/opt/universe/trunk-encode/galaxy/interfaces/tool_runner.py in index(self=<galaxy.interfaces.tool_runner.ToolRunner object>, tool_id=None, **kwd={})
   23         # No tool id passed, redirect to main page
   24         if tool_id is None:
   25             return httptools.redirect( "/static/welcome.html" )
   26         # Load the tool
   27         toolbox = self.get_toolbox()
httptools undefined

NameError: global name 'httptools' is not defined
      args = ("global name 'httptools' is not defined",)





Ross Hardison                                             
T. Ming Chu Professor of Biochemistry and Molecular Biology
The Pennsylvania State University
304 Wartik Laboratory
University Park, PA 16802
phone: 814-863-0113              FAX: 814-863-7024





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Re: error in plotting tools for Galaxy

Istvan Albert
Oh now I think I know what this is, I heard of a bug in Cherrypy  that
makes it ignore mime-types  (in this case pdf) when streaming the
output back, turns everything into text/plain.

We'll fix this shortly.


On 2/13/06, Ross Hardison <[hidden email]> wrote:

> The histogram-plotting tool and the scatter plot tool in Galaxy now return
> files that looks like pdf instructions but does not display as a graph.



--
Istvan Albert,
Research Associate,
Bioinformatics Consulting Center,
Huck Institute for Life Sciences,
Pennsylvania State University
http://www.personal.psu.edu/iua1