[Galaxy-user] [Genecats] what is an efficient way to combine data tracks? (fwd)

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[Galaxy-user] [Genecats] what is an efficient way to combine data tracks? (fwd)

Belinda M. Giardine
Does someone want to tell this person about the benefits of Galaxy?
UCSC has already told him about featureBits.

Belinda


---------- Forwarded message ----------
Date: Thu, 23 Feb 2006 17:54:49 -0800
From: Jing Zhu <[hidden email]>
To: [hidden email]
Subject: [Genecats] what is an efficient way to combine data tracks?

Hi everyone,

I need some help on a browser-related frustration

I have been performing intersections of data from more than two tables
(combining repeatmasker, simple repeats and pseudogene tracks) by using the
TABLE BROWSER.  But each step of this process takes a very long time to
finish, mostly displaying "loading ... " on web browser.  Although I manage
to finish it, I would prefer a faster method.  Can anyone give me a pointer
for an alternative approach? I am currently working on combining tracks of
functional annotation (Affy's gene expression track, refseq, mRNA, ESTs, and
RNAs) for the whole human genome.

Thanks in advance.

Jing
_______________________________________________
Genecats maillist  -  [hidden email]
http://www.soe.ucsc.edu/mailman/listinfo/genecats
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Re: [Genecats] what is an efficient way to combine data tracks? (fwd)

Anton Nekrutenko
THANKS!  I'll send him an e-mail.

anton


Anton Nekrutenko
Assistant Professor
Department of Biochemistry and Molecular Biology
Center for Comparative Genomics and Bioinformatics
505 Wartik Building
PennState University
University Park, PA 16802
814 865-4752
814 863-6699 FAX
[hidden email]
http://www.bx.psu.edu/~anton
http://g2.bx.psu.edu


On Feb 24, 2006, at 9:50 AM, Belinda M. Giardine wrote:

> [Genecats] what is an efficient way to combine data tracks?