Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
All I want is a question answered please! by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
CloudMan - Can't start nodes by greg
6
by greg
"Jobs is waiting to run" all day on Main by Lee Silver
6
by Lu, Mengmeng
Uploading files into local instance! Please help! by Di Nguyen
1
by Jen Hillman-Jackson
cufflinks eference annotation by i b
2
by Jen Hillman-Jackson
cuffdiff results missing by i b
2
by Jen Hillman-Jackson
Galaxy July 20, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Cuffconfusion by i b
1
by Jeremy Goecks
Problem setting up admin in Galaxy local instance! by Di Nguyen
1
by Daniel Blankenberg
cuffdiff failed by i b
1
by Jen Hillman-Jackson
Attempting to use parallelism in BWA by Kevin C. Dorff
2
by Dannon Baker
extracting, stitching, converting MAF files: interval_maf_to_merged_fasta.py: command line usage? by Anton Kratz
0
by Anton Kratz
Error in mapping with bowtie by Hongkyun Kim
1
by Jen Hillman-Jackson
quota limit by Hongkyun Kim
1
by Jen Hillman-Jackson
Galaxy intro webinar by wlathe
0
by wlathe
Post by Rachael Sirois
0
by Rachael Sirois
cuffcompare outputs missing by i b
1
by Jen Hillman-Jackson
GCC2012 Registration Deadline by Dave Clements-3
0
by Dave Clements-3
UCSC tools by i b
1
by Jen Hillman-Jackson
(no subject) by i b
1
by Jen Hillman-Jackson
cuffdiff by Irene Bassano
1
by Jen Hillman-Jackson
galaaxy history size (gb) by Irene Bassano
2
by Jen Hillman-Jackson
cufflinks reference annotation by Irene Bassano
1
by Jen Hillman-Jackson
sharing and publishing workflows using myExperiment by David De Roure
0
by David De Roure
Generating pile-up files without spliced (intronic) regions. by Mohammad Heydarian-2
0
by Mohammad Heydarian-2
account by Victoria Spartacus
0
by Victoria Spartacus
Trackster error: indexing by Nancy Au Yeung
2
by Jeremy Goecks
Galaxy Help!! by Robby Quinn
1
by Jen Hillman-Jackson
Gene BED to codon BED not working properly by Antony Jose
1
by Jen Hillman-Jackson
Initial QC and grooming for Illumina HiSeq2000 paired end RNAseq data by Lindsey Kelly
3
by Jen Hillman-Jackson
metagenomics question by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
fetch codons and amino acid by bingyu19821270
1
by Jen Hillman-Jackson
Tophat by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Re: Getting the installed data to show up in the sample files at run time by cjav
0
by cjav
"job is waiting to run" forever by Yehoshua Enuka
2
by shamsher jagat
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