Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
downloading a reference genome: Saccharomyces_cerevisiae_S288C_SGD2010 by Douda Bensasson
1
by Jen Hillman-Jackson
Bowtie mapping waiting to run for 3 days by Yanina Bogliotti
1
by Jen Hillman-Jackson
FTP down? by John Clayton
1
by Jen Hillman-Jackson
rescuing files from local installation of Galaxy by Amit Pande-2
1
by Jen Hillman-Jackson
Can I call SNPs and Indels in Galaxy by Mathew Bunj
1
by Jen Hillman-Jackson
Question about SICER out put by shamsher jagat
2
by shamsher jagat
How to extrapolate differentially expressed genes after running cuffdiff? by i b
1
by Jen Hillman-Jackson
reference genome uploading by i b
1
by Jen Hillman-Jackson
bcf to vcf by shamsher jagat
1
by Jen Hillman-Jackson
Question about Unified genotyper by Mathew Bunj
3
by Jen Hillman-Jackson
Job is waiting to run by Yan He
1
by Jen Hillman-Jackson
how to use user-defined reference? by Yan He
1
by Jen Hillman-Jackson
Fwd: Staring a Cloud Instance by Mark Lindsay
0
by Mark Lindsay
How to block anonymous access and disallow user registration‏ by joel
0
by joel
a question about cuffdiff "values" by Elwood Linney
1
by Jeremy Goecks
pairwise alignments by Alessandro testori
1
by Jen Hillman-Jackson
Local instance and storage space to provide by Scott McManus
0
by Scott McManus
Lost my history! by Jean-Philippe Coutur...
0
by Jean-Philippe Coutur...
Conservation (i.e. PhastCons) Q by Vincent Joseph Lynch
1
by Jen Hillman-Jackson
Fwd: PBS Server Throwing Errors by Scott McManus
1
by Scott McManus
Fwd: [galaxy-dev] Local instance and storage space to provide by Scott McManus
0
by Scott McManus
Running Cufflinks on Bacterial RNAseq data by Rachel Krasich
3
by Jen Hillman-Jackson
SNP analysis in Galaxy by shamsher jagat
0
by shamsher jagat
Datasets permanently deleted by Sarah Maman-2
2
by Sarah Maman-2
August 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Job En-queued, but not running by Vijaykant N
1
by Jen Hillman-Jackson
galaxy wiki error by lufang0411
1
by Jen Hillman-Jackson
tophat output spice junction output by i b
1
by Jen Hillman-Jackson
flaking regions across TSS by shamsher jagat
4
by Jen Hillman-Jackson
cuffdiff biological replicates by i b
0
by i b
cuffdiff: same gene listed with different FPKM values by i b
1
by Jen Hillman-Jackson
gene or transcript differential expression testing by i b
1
by Leonor Palmeira
metagenomic workflow by Asuncion Lago-2
1
by Judith van Bleijswij...
SAM Tools Pileup by So, Kathy GZ/US
1
by Jen Hillman-Jackson
The GATK has a new website and forum by Geraldine Van der Au...
0
by Geraldine Van der Au...
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