Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Table with gene count reads by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Minimum length of read segments by Du, Jianguang
1
by Jen Hillman-Jackson
Linking to Compressed Data by Branden Timm
1
by Jen Hillman-Jackson
From gff to gff3? by Yan He
1
by Jen Hillman-Jackson
inconsistent cuffdiff output-corrected question by i b
0
by i b
To access galaxy over the network by Masaki MS
2
by Masaki MS
Galaxy-installed - Localhost Not opening by Lizex Husselmann
1
by Scott McManus
copy number variation detcetion in Glaxay by shamsher jagat
4
by Mathew Bunj
Re: galaxy-user Digest, Vol 74, Issue 15 by De Kumar, Bony
0
by De Kumar, Bony
Use Own Junctions or not by Du, Jianguang
1
by Jen Hillman-Jackson
Do I need to allow indel search? by Du, Jianguang
1
by Jen Hillman-Jackson
Cuffdiff errors by Yan He
1
by Jen Hillman-Jackson
Galaxy toolshed-vcftools by Mahtab Mirmomeni
1
by Jen Hillman-Jackson
Can I convert paired-end datasets into single end ones? by Du, Jianguang
1
by Jen Hillman-Jackson
How to decide "Mean Inner Distance between Mate Pairs"? by Du, Jianguang
2
by Jen Hillman-Jackson
picard bam statistic by i b
3
by Jen Hillman-Jackson
how to sort mapped data? by Yan He
3
by Jen Hillman-Jackson
mapping reads to an shRNA library? by s_hight
1
by Jen Hillman-Jackson
Map with Bowtie or Tophat? by i b
1
by Jen Hillman-Jackson
should I run FASTQ Groomer? by Du, Jianguang
1
by Jen Hillman-Jackson
whixh setting should be used to upload mouse reference genome? by Du, Jianguang
1
by Jen Hillman-Jackson
which reference genome should I select by Du, Jianguang
1
by Jen Hillman-Jackson
cuffcompare inputs by i b
1
by Jen Hillman-Jackson
Extreme parallelization for NGS analysis by Josh Tietjen
0
by Josh Tietjen
cuffdiff with three groups by i b
1
by i b
Install Galaxy on Mac by Edward Turk
12
by Jen Hillman-Jackson
need help to split paired-end dataset by Du, Jianguang
1
by Jen Hillman-Jackson
(no subject) by Du, Jianguang
0
by Du, Jianguang
reference genome format for tophat by i b
1
by Jen Hillman-Jackson
Problem with running Cufflinks by Yan He
1
by Jen Hillman-Jackson
FASTQ splitter produced empty dataset, please help by Du, Jianguang
1
by Jen Hillman-Jackson
Extracting all CpG-SNPs from dbSNP135 by Richard Henriksson
0
by Richard Henriksson
how to split paired-end dataset of FASTQ format by Du, Jianguang
1
by Bram Van den Bergh
Streptococcus suis genome by Joerg Willenborg
1
by Jen Hillman-Jackson
help for alternative splicing with RNA-seq analysis by Du, Jianguang
1
by Jen Hillman-Jackson
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