Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Tophat settings by Du, Jianguang
0
by Du, Jianguang
Tools won't go away even after deleting it from tool_conf.xml by Makis Ladoukakis-2
1
by Hans-Rudolf Hotz
git mirror by Luca Pireddu
3
by Shantanu Pavgi
Downloading a zip file ....... by Neil.Burdett
1
by Jen Hillman-Jackson
MACS- Duplicate reads removal by Yanina Bogliotti
1
by Jen Hillman-Jackson
No reference genome listed for NGS: Mapping Map with TMAP for Ion Torrent by Catherine Dumur
1
by Jen Hillman-Jackson
problem running MACS on Galaxy by Amit Pande-2
1
by Jen Hillman-Jackson
September 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Should I "use raw junction" and "Only look for supplied junctions" by Du, Jianguang
1
by Jen Hillman-Jackson
Installing galaxy with Apache ... by Neil.Burdett
5
by Neil.Burdett
How to decide if the deference is significant by Du, Jianguang
0
by Du, Jianguang
Is there web-based CummeRbund? by Du, Jianguang
2
by cjav
Text Manipulation by Jen Hillman-Jackson
2
by Lee Silver
Please help with the settings for Cufflink, Cuffmerge and Cuffdiff by Du, Jianguang
1
by Jen Hillman-Jackson
Galaxy-France -- Communauté française de Galaxy (French Galaxy Community) by Dave Clements-3
0
by Dave Clements-3
Please help me check the quality of the Tophat mapping to reference genome by Du, Jianguang
2
by Du, Jianguang
Calling SNP by francesco
0
by francesco
Extract Spliced Transcripts from Cuffmerge by Hanson, Sara J
1
by Jen Hillman-Jackson
Is tss_id unique for each transcript? by Du, Jianguang
1
by Jen Hillman-Jackson
regarding upload of data locally on galaxy by Amit Pande-2
1
by Jen Hillman-Jackson
Should I use iGenomes verson of a reference GTF for Tophat? by Du, Jianguang
6
by Jen Hillman-Jackson
Installing Galaxy and Hooking into a SGE Cluster by greg
7
by John Jones
How much can I trimm my reads by Du, Jianguang
1
by Jen Hillman-Jackson
tophat deletions output by i b
1
by Jen Hillman-Jackson
inconsistent cuffdiff output by i b
1
by Jen Hillman-Jackson
How to find the alternatively spliced segment of genes in Cuffdiff output by Du, Jianguang
1
by Jen Hillman-Jackson
How to upload multiple files...... by Neil.Burdett
1
by Jen Hillman-Jackson
inconsistent cuffdiff by i b
3
by Sarah Marcus
URL file upload... and file upload renamed by Neil.Burdett
2
by Nate Coraor
FTP upload problem by Fatih Ozsolak
3
by Fatih Ozsolak
LimitInternalRecursion by Adhemar
0
by Adhemar
run Bowtie to estimate Mean Inner Distance between Mate Pairs by Du, Jianguang
5
by Du, Jianguang
Files uploaded via FTP - 530 Sorry, the maximum number of clients (3) for this user are already connected. by Julie Rodor
1
by Jen Hillman-Jackson
cuffdiff sample values assigned by i b
2
by Jen Hillman-Jackson
Counting intervals in one file overlapping intervals in another file - what are the hidden settings? by Mohammad Heydarian-2
3
by Daniel Blankenberg
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