Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
server down? by DEDRICK
1
by Jen Hillman-Jackson
Training by Ryan Peters
1
by Jen Hillman-Jackson
FreeBayes repeated error by Dalgard, Clifton
0
by Dalgard, Clifton
GFF not recognized in CUFFLINK by Qian Dong
7
by Jen Hillman-Jackson
adding D. yakuba reference genome by Stern PhD, David L
1
by Jen Hillman-Jackson
Galaxy for SAGESeq by Sujoy Ghosh
0
by Sujoy Ghosh
extract genome sequence by Yan He
5
by Jen Hillman-Jackson
public repository for workflows? by Kenny Billiau
0
by Kenny Billiau
Galaxy September 20, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
How much FPKM can be take into consideration when compare gene expression by Du, Jianguang
1
by Luciano Cosme
How to rotate Galaxy log file by Lukasz Lacinski
1
by Jen Hillman-Jackson
Cloudman share string not working by greg
3
by Dannon Baker
Error executing tool: Unable to create output dataset: object store is full by mainacio
1
by Jen Hillman-Jackson
Galaxy error: can't fine fasta file by kauerbach
3
by Jen Hillman-Jackson
FTP upload problem by Yan He
3
by Jen Hillman-Jackson
Galaxy CloudMan - Nodes can't make their own qsub calls? by greg
8
by greg
Does Tophat output *.accepted hits file contain headers? by Du, Jianguang
1
by Jen Hillman-Jackson
problem uploading via FTP server by L.M. Slot
1
by Jen Hillman-Jackson
none availability genome.fa files through mapping modules on local server by imbeaud
1
by Jen Hillman-Jackson
No output produced..... by Neil.Burdett
1
by Jeremy Goecks
Counting RNA-seq reads per class. by Mohammad Heydarian
2
by Jen Hillman-Jackson
How can I extract sequence information fromm cuffdiff files? by Humberto Boncristian...
2
by Jen Hillman-Jackson
Tophat results by Xiefan Fang
1
by Jen Hillman-Jackson
Fwd: Galaxy: RNA-seq analysis problems by James Taylor-3
1
by Jen Hillman-Jackson
What is the minimum Quality should I set for Filter FASTQ? by Du, Jianguang
5
by Jen Hillman-Jackson
Unable to BAM data on UCSC or Ensembl browsers by Joachim Jacob | VIB ...
1
by Daniel Blankenberg
Peak-calling with MACS from .bowtie file by S├ębastien Vigneau-2
1
by Jen Hillman-Jackson
Using tool on input data set by kauerbach
1
by Peter Cock
Amplicon analysis with Galaxy by Juha-Pekka Pursiheim...
0
by Juha-Pekka Pursiheim...
MACS out put files from Galaxy by peter scot
2
by Jen Hillman-Jackson
interupted running jobs restart by petr
1
by Nate Coraor
Possible to share with non-galaxy users on a login-required by Joachim Jacob | VIB ...
1
by Jen Hillman-Jackson
Number of mismatches allowed in the initial read mapping by Du, Jianguang
1
by Jen Hillman-Jackson
Galaxy September 7, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Please help to understand the square root of Jensen-Shannon divergence by Du, Jianguang
3
by Jen Hillman-Jackson
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