Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Upload data to local Galaxy by copying them to the file folder by Jerzy Dyczkowski-2
1
by Jen Hillman-Jackson
job information on galaxy by i b
2
by Daniel Blankenberg
Error message on local install by Chris Merrikh
2
by Jen Hillman-Jackson
from Galaxy to Megan by Judith van Bleijswij...
1
by Jen Hillman-Jackson
Galaxy not showing my reference genome in Drop down for BowTie by greg
4
by greg
Why doesn't bowtie in galaxy accepting colorspace reads directly? by Praveen Raj Somaraja...
1
by Jen Hillman-Jackson
galaxyTools volume not given enough time to attach by joel
3
by joel
genome-wide Bisulfite analyses ... was Re: Infinite TopHat run by Björn Grüning
2
by Björn Grüning
RNA-seq analysis withtout reference genome by Alicia R. Pérez-Porr...
1
by Jen Hillman-Jackson
Infinite TopHat run by Jonsson, Philip
2
by Jen Hillman-Jackson
Data Limit by Mark Lindsay
4
by Jen Hillman-Jackson
data expiration policy by Hiram Clawson
1
by Jen Hillman-Jackson
How to do an GO enrichment analysis in Galaxy? by Yan He
3
by Jen Hillman-Jackson
please restore my account by Du, Jianguang
0
by Du, Jianguang
Cannot install ncbi_blast_plus or other tools from Tool Shed: HTTP 500 error by joel
2
by joel
Are tools must be installed in local machine? by sachitad
3
by cjav
cuffdiff fold change by i b
0
by i b
RSEM on Galaxy by Alicia R. Pérez-Porr...
3
by sachitad
Galaxy October 5, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Datasets Disappear following import of additional datasets by Josh Romney
1
by Jen Hillman-Jackson
Fastq-groomer help by Kshama Aswath
1
by Nate Coraor
Trim Galore Galaxy Integration by sachitad
1
by Björn Grüning
Trim Galore Galaxy Integration by sachitad
0
by sachitad
Re: Galaxy in cloud (not Amazon) by Enis Afgan
0
by Enis Afgan
GeneTrack server error by Doo Yang
1
by Jen Hillman-Jackson
Performing operations on tab delimited text files by Lanelle Oni Edwards
1
by Jen Hillman-Jackson
blast tools on free public server by Diadema
2
by Peter Cock
Cannot find upload options by Matina Fragkogianni
1
by Jen Hillman-Jackson
Installing Galaxy on SGE Cluster - Questions by greg
3
by Nate Coraor
Cuffdiff no without replicates by i b
2
by Sean Davis
Galaxy download by Lizex Husselmann
0
by Lizex Husselmann
FTP Upload Error by Amanda Jones
1
by Jen Hillman-Jackson
October 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
igenome error by Paul Brady
2
by Darrol Baker
Errors during database migration after updating galaxy by joel
2
by Greg Von Kuster-2
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