Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Unmapped reads from tophat by kevyin
1
by Ido Tamir
Local Install - Understanding Upload File Concept by greg
8
by greg
Galaxy server configuration - what is [server:main]? by greg
1
by Dannon Baker
SNPeff on human genome by David Sims
1
by Jen Hillman-Jackson
Help to identify variants with clinical/phenotype associations by Luis Santomé
1
by Jen Hillman-Jackson
Repeated Error with Tophat by Karen Sears
1
by Jen Hillman-Jackson
Map with Bowtie problem by andrewto@wp.pl
1
by Jen Hillman-Jackson
Galaxy November 14, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Downgrading toolshed tools by Paul-Michael Agapow-...
1
by Greg Von Kuster-2
stderr on Samtools sort by Masaki MS
2
by Peter Cock
Warning message by Rolando Mantilla
1
by Daniel Blankenberg
cuffdiff by Vevis, Christis
1
by Jeremy Goecks
Trouble Installing Galaxy on Cluster by greg
4
by greg
primer contamination, miranalyzer by Rosie Griffiths
1
by Jen Hillman-Jackson
Identification of replicate outlier by Dave Corney
3
by Jeremy Goecks
Teaching GALAXY by lreiter
11
by lreiter
Unresponsive by Kit Nazor
0
by Kit Nazor
(no subject) by Vevis, Christis
1
by Jeremy Goecks
tophat by Vevis, Christis
1
by Dannon Baker
Account had be deleted ? by Diam Hsu
1
by Nate Coraor
Byte-range request problem by Philippe Veber-2
1
by Philippe Veber-2
new_file_path setting in universe_wsgi.ini by greg
0
by greg
How to show sequence length data by Zhiqiang Shu
1
by Peter Cock
Installing Galaxy on a Cluster - What to do about Python by greg
4
by cjav
Help: determining the exon number of exonic variants by Luis Santomé
0
by Luis Santomé
Create an index with samtools within a pipeline? by Joshua Orvis
0
by Joshua Orvis
Cluster Install - Trouble finding drmaa egg by greg
10
by Oleksandr Moskalenko
Perpetual "Job is waiting to run" by Burger, Francois, Mn...
0
by Burger, Francois, Mn...
cufflinks visualization by i b
2
by Jeremy Goecks
Export to file by Dave Corney
8
by Neil.Burdett
Latest supported Cufflinks? by Bidwell, Christopher...
3
by Jen Hillman-Jackson
Getting error in Bismark by sachitad
1
by Björn Grüning
Using syncing tool in Galaxy by sachitad
1
by Neil.Burdett
November 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Manage libraries permissions with API by Fabien Mareuil
0
by Fabien Mareuil
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