Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
User stats by Nicholas Beckloff
1
by Dave Clements-3
conditional in Compute tool by Ido Tamir
0
by Ido Tamir
Tophat alignment statistics? by Wei Liao
1
by Praveen Raj Somaraja...
Problem in Manage data Library by sachitad
1
by Anthonius deBoer
order of steps by Zhiqiang Shu
1
by Jen Hillman-Jackson
NGS SAM Tools: Filter Pileup tool not working by Lanelle Oni Edwards
1
by Jen Hillman-Jackson
Barcode splitting by Rajarshi Ghosh
2
by Jen Hillman-Jackson
Trouble with KB1454chr5.bam, Bushman Chrm5, 454 data only by Allan Lindh
0
by Allan Lindh
compare two dataset by Peppe
0
by Peppe
December 3, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
NGS with Arabidopsis thaliana built-in-index by Tom Smith
1
by Jen Hillman-Jackson
how to download onto a server? by Loraine, Ann
1
by Jen Hillman-Jackson
Boxplot error. by 柴田 弘紀
0
by 柴田 弘紀
dataset not visible by Ilse Vandecandelaere
1
by Jen Hillman-Jackson
History Pane empty? by jason gagliano
2
by Jen Hillman-Jackson
Re: Analysis in queue but not running by Dave Clements-3
0
by Dave Clements-3
December 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Cuffdiff tracking file does not report all genes and trancrips from reference annotation? by Wei Liao
1
by Jen Hillman-Jackson
User's information by sachitad
1
by Peter Cock
"Metadata is being auto-detected" stuck in continuous loop by Redvers Richard
0
by Redvers Richard
Cuffdiff without gene annotation by Peppe
0
by Peppe
filter for +/- 2-fold difference in expression levels by Peppe
3
by Jen Hillman-Jackson
How good is Galaxy as a data repository and for cross-experiment querying? by Yuhao
0
by Yuhao
trim adapters and other by Zhiqiang Shu
0
by Zhiqiang Shu
Clip doesn't see my FASTQ file by Stephen Eacker
1
by Jen Hillman-Jackson
Stitch Gene blocks return empty result??? by mart555@163.com
1
by Jen Hillman-Jackson
Data/history/user export and import by Bossers, Alex
0
by Bossers, Alex
Bismark Error: Data table named 'bismark_bs_indeces' is required by tool but not configured. by sachitad
1
by Greg Von Kuster-2
combining two fastq files by shamsher jagat
4
by Jen Hillman-Jackson
Find out sense and antisense sequences by Zhiqiang Shu
6
by Jen Hillman-Jackson
BWA mapping with index file from history by shamsher jagat
1
by Jen Hillman-Jackson
Why is 'Filter pileup' not recegnising my 'Generate pileup' file? by Jacqui Stockley
1
by Jen Hillman-Jackson
New Galaxy CloudMan Release by Enis Afgan
0
by Enis Afgan
help by Dr. Mira A. Bisso
0
by Dr. Mira A. Bisso
Curious-- what does "You are currently viewing a deleted history!" mean? by Bob Harris
0
by Bob Harris
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