Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
bc-bio galaxy by Jim
1
by Brad Chapman-2
March 2014 Galaxy Update Newsletter by Dave Clements-3
0
by Dave Clements-3
Galaxy + user program unable to locate files by do kadya
3
by Peter Cock
processing multiple files by mark.rose
1
by Jen Hillman-Jackson
large data to upload problem by do kadya
5
by Björn Grüning-2
RNA-seq work flow does not work by AlejandroColaneri
1
by Jen Hillman-Jackson
Variant annotation in galaxy by garzetti
3
by garzetti
Converting VCF to gd_genotype by Mike Montague
1
by Jen Hillman-Jackson
upload more than 2GB data from local computer to local installation of galaxy by do kadya
3
by Martin Čech
matlab + galaxy by do kadya
1
by Björn Grüning-2
Read simulator by garzetti
3
by Jen Hillman-Jackson
CummeRbund - biological replicates problem by Dottorini, Tania
2
by Jen Hillman-Jackson
metadata error when using megablast by Elaine Youngman
1
by Jen Hillman-Jackson
A Query by Eva Carolina Rueda
1
by Jen Hillman-Jackson
Disable seeding using Galaxy by Thierry Grange
1
by Jen Hillman-Jackson
confusion from "Extract Genomic DNA (version 2.2.3) " by Lu, Mengmeng
1
by Jen Hillman-Jackson
Galaxy job is waiting to run forever by makra
3
by Martin Čech
Same RNAseq samples give different FPKM values when run against different samples by Elwood Linney
1
by Jen Hillman-Jackson
FTP Error by Andres Lavore
1
by Jen Hillman-Jackson
How can I get back a permanently deleted history? by Enklaar, Thorsten
0
by Enklaar, Thorsten
Bisulfite seq by Mathew Bunj
1
by Björn Grüning-2
Re: galaxy-user Digest, Vol 91, Issue 21 by Gang Wang
6
by Gang Wang
cuffmerge by patterja
1
by Jen Hillman-Jackson
Error running the Picard tool? by Dottorini, Tania
1
by Jen Hillman-Jackson
Depth of coverage error by imbeaud
1
by Jen Hillman-Jackson
Picrust upload by Ines
1
by Jen Hillman-Jackson
Questions regarding Circster visualization by Friederike Dündar
3
by Jeremy Goecks-2
Help with Cuffdiff by Maria Hoffman
2
by Jen Hillman-Jackson
Feb 10, 2014 Galaxy Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Re: Finding constitutive exons using expression data (7plusorminus 3) by Sébastien Vigneau
0
by Sébastien Vigneau
Finding constitutive exons using expression data by 7plusorminus 3
0
by 7plusorminus 3
Constitutive exon workflow? by 7plusorminus 3
0
by 7plusorminus 3
How do I remove "Histories shared with you by others"? by Casey Bergman
4
by Casey Bergman
Query regarding NCBI BLAST+ blastx by Deepak Datta
2
by Peter Cock
Chip-SEq S.cerevisiae IOn-Torrent by Mónica Pérez Alegre
1
by Jen Hillman-Jackson
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