Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Building a combined annotated transcriptome to use as a reference annotation in RNA-Seq analysis by Davide Degli Esposti
0
by Davide Degli Esposti
galaxy cloudman login by Sun, Wenping [USA]
3
by Dannon Baker
January 2013 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Seqpos output not visible in Safari/Firefox/Chrome by Biswajyoti Sahu
0
by Biswajyoti Sahu
incompatible frame by Barbara Bryant
1
by Jen Hillman-Jackson
Pipeline design for bacterial RNA-Seq by Bernardo Bello
1
by Jen Hillman-Jackson
running out of disk space in cloudman instance by Siddhartha Basu
0
by Siddhartha Basu
galaxy cluster nodes from the cloudlaunch site by Sun, Wenping [USA]
10
by Sun, Wenping [USA]
How to display data at UCSC main? by Anna Vilborg
2
by Daniel Blankenberg
Galaxy December 20, 2012 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
galaxy cloudman login and aws instance by Sun, Wenping [USA]
9
by Dannon Baker
upload workflow on cloudman by Sun, Wenping [USA]
0
by Sun, Wenping [USA]
add publicly available genomes? by Camilla Nesbo
1
by Jen Hillman-Jackson
question on galaxy reference genome window by Sun, Wenping [USA]
3
by Dannon Baker
Error in TopHat by sachitad
1
by sachitad
How to Provide .gtf file to tophat2 by greg
2
by greg
cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) by Davide Degli Esposti
2
by Jen Hillman-Jackson
Galaxy Question by D. A. Cowart
2
by Jen Hillman-Jackson
rice reference genome by Jen Hillman-Jackson
1
by Jen Hillman-Jackson
Bowtie index in data libraries by Anthony Bretaudeau
1
by Jen Hillman-Jackson
Data library and symbolic link by MONJEAUD
1
by Jen Hillman-Jackson
GATK Not running by Farooq,Umar (res)
7
by Farooq,Umar (res)
Should fastq files be merged? by karenj
1
by Jen Hillman-Jackson
Link to display BED files in UCSC Genome Browser by luce
1
by Jen Hillman-Jackson
How to add to add hg16 index into the build-in index / reference gnome list? by sachitad
1
by Jen Hillman-Jackson
Searching Galaxy Tool Shed gives error by Joachim Jacob | VIB ...
1
by Greg Von Kuster-2
How to add a built-in index for Tophat2? by sachitad
0
by sachitad
Galaxy doesn't detect the file when we add dataset to a library under Manage data libraries by sachitad
0
by sachitad
Sliding window to get average of a seq reads by shamsher jagat
1
by Jen Hillman-Jackson
Windows function not working by shamsher jagat
1
by Jen Hillman-Jackson
Tophat error. by Humberto Boncristian...
1
by Jen Hillman-Jackson
Downloading the gene coordinates of the rice genome by maheshi dassanayake
1
by Loraine, Ann
Trimming and thinning of paired-end reads by Alicia R. Pérez-Porr...
0
by Alicia R. Pérez-Porr...
Compute sum per row by Joachim Jacob | VIB ...
1
by Jen Hillman-Jackson
Using -q trimming options in bwa by Aung-Kyaw Chi
0
by Aung-Kyaw Chi
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