Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
reference annotation for whole transcriptome RNA-Seq by Davide Degli Esposti
1
by Jen Hillman-Jackson
How to run DESeq? Please Help. by Ben Ben
0
by Ben Ben
2013 Galaxy Community Conference (GCC2013) Training Day: Please vote! by Dave Clements-3
0
by Dave Clements-3
Moving history datasets to libraries by Ted Goldstein
2
by Ted Goldstein
Problem Joining Two Datasets by Kim Spradling
1
by Jen Hillman-Jackson
bed file error by SCHEIN ALEKS
1
by Jen Hillman-Jackson
bwa and bowtie not working by naveed ahmed
1
by Jen Hillman-Jackson
Search software on public Galaxy servers by Bernardo Bello
1
by Jen Hillman-Jackson
Runtime data? by Joshua Orvis
1
by Jen Hillman-Jackson
long waiting time for Bowtie jobs? by s_hight
1
by Jen Hillman-Jackson
Upload files not working? by Daniel Sher-3
3
by Jen Hillman-Jackson
"spot" EC2 instances for Galaxy? by Andrew Norman
1
by Dave Clements-3
Workflows by Neil.Burdett
3
by Dannon Baker
Login problems by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Tophat mapping and Cufflinks output issues by Jim Cohen
1
by Jeremy Goecks
identify different number of differential expressed genes using ensemble or reseq GTF by Wei Liao
3
by Wei Liao
Re: converting solid files by Enis Afgan
0
by Enis Afgan
Uploading files to history via API by Neil.Burdett
0
by Neil.Burdett
Galaxy January 11, 2013 Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
macs error for chipseq data by Sun, Wenping [USA]
2
by Sun, Wenping [USA]
where to submit galaxy error messgae by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
BWA and FASTQ Joiner issues by Hilde Stawski
1
by Jen Hillman-Jackson
Download data using FTP-access? by karenj
2
by Jen Hillman-Jackson
Remove "unpaired" reads from quality-filtered pared-end fastq files. by 柴田 弘紀
2
by Jen Hillman-Jackson
joining two FASTq files with overlap reads by shamsher jagat
3
by Jen Hillman-Jackson
Trackster custom builds wrong by Jen Hillman-Jackson
1
by Jeremy Goecks
Re: [Ticket#2013010710000031] Installation de ChipMunk sur Genotoul by Sarah Maman-2
2
by alermine
gene names from cuffdiff data by Elwood Linney
1
by Jen Hillman-Jackson
Nominate topics for the 2013 Galaxy Community Conference (GCC2013) Training Day by Dave Clements-3
1
by Dave Clements-3
nebula suite / _chiphorde.log not found by Sarah Maman-2
1
by alermine
(no subject) by Eric Guo
1
by Jen Hillman-Jackson
Add new page server error by Aaron Stonestrom
1
by Jeremy Goecks
Error Running CuffCompare on Galaxy Server by Samit Watve
0
by Samit Watve
galaxy test dataset listing by Sun, Wenping [USA]
1
by James Taylor-3
Batch jobs... by Neil.Burdett
17
by Ross-2
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