Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Post Galaxy-ChIP-seq analysis: UCSC Genome browser can't read the wig file by The Immunologist
0
by The Immunologist
Post Galaxy-ChIP-seq analysis: UCSC Genome browser can't read the wig file by The Immunologist
1
by Jen Hillman-Jackson
Re: Welcome to the "galaxy-user" mailing list (Digest mode) by The Immunologist
1
by Dannon Baker-2
sicer dose not support chicken genome by Chen, Jingchen
1
by Jen Hillman-Jackson
mitochondrial transcripts by Brown, Tim
3
by Jen Hillman-Jackson
error in .vcf .bcf files from freeBayes and mPileup by stefano cardinale-2
0
by stefano cardinale-2
Uploading large archive histories by Getiria Onsongo
2
by Jen Hillman-Jackson
replicates in cuffdiff output by Johanna Sandgren
1
by Jeremy Goecks
Rscript not found when running shell script in Galaxy by Makis Ladoukakis-2
2
by Bossers, Alex
galaxy-user submission by Oya Uyguner
1
by Jen Hillman-Jackson
Problem by Christopher O'Toole
1
by Jen Hillman-Jackson
Installing new tools from the tool shed by David Joly
1
by David Joly
Reference Genome in Lastz by Murphy, Caitlin N
1
by Jen Hillman-Jackson
Galaxy on one computer not showing latest runs in history by Dikla Aharonovich
1
by Dannon Baker-2
hg19 reference gnome for Tophat2 by sachitad
1
by sachitad
cufflinks output for cummeRbund by mshamblott
1
by Jeremy Goecks
Galaxy Join takes too long? by Milad Bastami
2
by Milad Bastami
Discrepancy between Intersect and Join by Aaron Quinlan
6
by Aaron Quinlan
Galaxy February 8, 2013 Distribution & News Brief by Jen Hillman-Jackson
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by Jen Hillman-Jackson
Why SGE needed for galaxy ? by Zeeshan Ali Shah
2
by Zeeshan Ali Shah
gather results from multiple histories by mark.rose
1
by Anton Nekrutenko
Galaxy Help by John Phillips
2
by Jen Hillman-Jackson
Re: Fwd: Converting files to gd_snp format by Cathy Riemer-4
0
by Cathy Riemer-4
can't download big files by Allan
2
by Allan
Error using trackster by Kilaru, Varun
6
by Kilaru, Varun
February 2013 Galaxy Update by Dave Clements-3
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by Dave Clements-3
error message running Cufflinks on local galaxy by Davide Degli Esposti
1
by Jen Hillman-Jackson
error running cufflinks by Davide Degli Esposti
1
by Jen Hillman-Jackson
gather results from multiple histories by mark.rose
1
by Dannon Baker
Re: [galaxy-dev] extract DNA sequences by Jeremy Goecks
0
by Jeremy Goecks
does Galaxy have a tool for converting .sra files to fastq files? by Elwood Linney
2
by Anton Nekrutenko
running time of Cufflinks on main Galaxy by Davide Degli Esposti
1
by Jen Hillman-Jackson
Converting files to gd_snp format by Sheehan, Michael - (...
0
by Sheehan, Michael - (...
Mapping miRNA data by Mark Lindsay
1
by Jen Hillman-Jackson
How to determine differentially expressed genes using Galaxy? by Ben Ben
1
by Jen Hillman-Jackson
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