Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Server error during custom build on main by Michael Axtell
3
by Jen Hillman-Jackson
Medicago and Soybean Genome in Galaxy by Oswaldo Lopez
1
by Jen Hillman-Jackson
Galaxy LinkedIn Group by Dave Clements-3
0
by Dave Clements-3
Importing archived Histories by Clare Sloggett
1
by Jeremy Goecks
Cuffdiff statistical calculations are inconsistent? by jes227
4
by Jeremy Goecks
How to connect to private instance of galaxy from another computer by Michael Milevskiy
1
by James Taylor-3
Early registration for GMOD meeting closes in one week by Scott Cain
0
by Scott Cain
User dropdown menu as galaxy input file by Alex Upton
1
by Dan Tenenbaum
Knowing who is currently logged into your system by Akshay Vivek Choche
0
by Akshay Vivek Choche
ftp upload problem by Matthijs Raaben
1
by Matthijs Raaben
Web Galaxy server and load by aholtzmorris
1
by Jen Hillman-Jackson
Amazon EC2: An error occurred running this job: Job output not returned from cluster by Brian Lin
0
by Brian Lin
convert to BigWig by Kristin Denise Kerno...
0
by Kristin Denise Kerno...
SciPy 2013 Conference Announcement by Matthew McCormick
0
by Matthew McCormick
Re: [galaxy-dev] not enough memory space on my galaxy session by Jeremy Goecks
0
by Jeremy Goecks
Reminder: Galaxy Main & Test Server downtime for hardware relocation Thursday, March 14, 2013 by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
How should I include biological replicates in cufflink/cuffdiff? by Qian Dong
3
by Jeremy Goecks
Why don't we get FPKMs from this gene? by Dikla Aharonovich
4
by Daniel Sher-3
wrong disk usage figure reported on galaxy main by pbourbon
1
by Nate Coraor
Galaxy Main & Test Server downtime for hardware relocation Thursday, March 14, 2013 by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Local galaxy install vs cloudman by James Vincent
1
by Enis Afgan-2
What is the quality score type for the Solid datasets downloaded from SRA of NCBI? by Gene Genome
1
by Jen Hillman-Jackson
Count reads mapping to introns, extragenic regions by Alex Koeppel
1
by Jen Hillman-Jackson
Filter Pileup in SAM tools by Andrew South
1
by Anton Nekrutenko
Error / Nebula and RepeatMasker by Sarah Maman-2
7
by Sarah Maman-2
Setting up galaxy local server by Anusha Nagari
0
by Anusha Nagari
March 2013 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Support Question by Thomas Muench
0
by Thomas Muench
Viral metagenomics by Mohammad Mohiuddin
1
by Peter Cock
"join,subtract and group" tools can't be used by Lu, Mengmeng
2
by Jen Hillman-Jackson
How to create a tool from a script that loads additional source code files? by Samuel Lampa
2
by Samuel Lampa
2013 Galaxy Community Conference (GCC2013) Registration and Abstract Submission are Now Open by Dave Clements-3
0
by Dave Clements-3
Installing Galaxy on ARM Architecture by Shun Liang
2
by Shun Liang
History not updating for multiple instances of Galaxy by Neil.Burdett
2
by Peter Cock
extracting a subset of sequences from a very large fasta file(1.5 million) by peruvijayan
11
by Jen Hillman-Jackson
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