Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Are reads of 36nt in length long enough to accutatly map on splicing junctions? by Du, Jianguang-2
7
by Jeremy Goecks
merging fastq files by andrewt
5
by Jen Hillman-Jackson
Parameters for merging BAM files by Du, Jianguang-2
2
by Du, Jianguang-2
Using segments of sequences as a reference genome - Bowtie for Illumina by Veranja Liyanapathir...
4
by Veranja Liyanapathir...
problem using Depth of Coverage (GATK) by ge2sasag
1
by Jen Hillman-Jackson
files upload helo by Dipanjana Datta De
1
by Jen Hillman-Jackson
tophat job help by Dipanjana Datta De
1
by Jen Hillman-Jackson
Extracting sequences for transcripts from reference genome by Lizex Husselmann
1
by Jen Hillman-Jackson
GCC2013 Talk Abstract Submission closes this Friday by Dave Clements-3
0
by Dave Clements-3
Change format with "edit attributes" by ge2sasag
5
by Jen Hillman-Jackson
Genomic Intervals Coverage: csv of 2nd dataset Identifiers by Kumar, Charu Gupta
1
by Jen Hillman-Jackson
Peak Overlap Analysis, allowing space between "overlapping" peaks by Eric Van Otterloo
1
by Jen Hillman-Jackson
(no subject) by Davide Degli Esposti
1
by Jeremy Goecks
FastQC Issue with per base nucleotide quality graph by jtan
3
by Anton Nekrutenko
Call for papers for a special GCC2013 and Galaxy series in GigaScience by Dave Clements-3
0
by Dave Clements-3
Extracting sequences for transcripts from reference genome by Lizex Husselmann
0
by Lizex Husselmann
Phyloviz and problem viewing nexus and newick files by ylebras
1
by James Taylor-3
April 2013 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Galaxy April 1, 2013 Distribution by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
GCC2013 Oral Presentation Abstract Submission Closes 12 April by Dave Clements-3
0
by Dave Clements-3
Uploading Illumina BAM files in Galaxy by bhattp
1
by Jen Hillman-Jackson
downloads MAF files by Navin Rustagi
1
by Jen Hillman-Jackson
Depth command in SAM tools by Els Willems
1
by Jen Hillman-Jackson
is there size limit of dataset for running Tophat? by Du, Jianguang-2
1
by Jen Hillman-Jackson
glitch in .wig visualization in trackster? by Michael Axtell
3
by Michael Axtell
Finding Indels by Irene Kaplow
1
by Jen Hillman-Jackson
Question about tool by Sandra Santos
1
by Jen Hillman-Jackson
History items remain pending (grey color) by bhattp
3
by bhattp
Could not find the refseq from database list by xiaogeng Feng
1
by Jen Hillman-Jackson
Last day for early registration for GMOD 2013 by Scott Cain
1
by Amelia Ireland
software post alignment by Peppe
1
by Jeremy Goecks
Using BWA to map without any mismathces by Daniel Sher-3
2
by Jen Hillman-Jackson
Do I need to specify the file format when I upload datasets using FTP method? by Du, Jianguang-2
1
by Jen Hillman-Jackson
Galaxy Main jobs not running? by Nicole Cloonan
2
by Nicole Cloonan
Problem with workflow step ordering by Ian Donaldson
1
by Jen Hillman-Jackson
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