Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
trimming illumina reads from 3' without considering quality score by Mathew Bunj
1
by Jen Hillman-Jackson
Tophat for Illumina is not running by lilach noy
1
by Jen Hillman-Jackson
Can Galaxy help with Comparative Genomics? by Joshua Burkhart [uor...
2
by Joshua Burkhart [uor...
GFF parsing with biopython by Mic
0
by Mic
GenBank database files by Mike Dyall-Smith
2
by Peter Cock
Gain sequences after mapping reads to a reference genome by zwp112358
1
by Jen Hillman-Jackson
gff installation failed with easy_install by Mic
0
by Mic
Regarding combining several txt files and producing one fastq file by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
problem with the public Main Galaxy server by Peppe
1
by Jen Hillman-Jackson
Barcode splitter on paired end Illumina reads by Veranja Liyanapathir...
1
by Jen Hillman-Jackson
Problems Adding a Custom Build by Mackenzie Gavery
1
by Jen Hillman-Jackson
Join, Subtract and Group PLUS large GOA files by Colleen Burge
3
by Jen Hillman-Jackson
ImportError: Unable to run arch-specific checks by Shun Liang
2
by James Taylor-3
Teaching using Galaxy by David Joly
5
by David Joly
preprocessing gDNA illumina paired end data for mapping/snp calling by terbotim
1
by Jen Hillman-Jackson
Uses for Galaxy by bhattp
0
by bhattp
trouble using bcf tools. by Patrick Leahy
1
by Jen Hillman-Jackson
problem with the joining of two interval dataset by Milad Bastami
1
by Jen Hillman-Jackson
Jobs waiting to run over a week by Benard Lab
1
by Jen Hillman-Jackson
Regarding a cuffdiff output by Yona Kim
2
by Jen Hillman-Jackson
hello Newbie questions about galaxy and clustering by leconte
2
by Nate Coraor
Fwd: [Gmod-announce] 2013 GMOD Summer School: Apply now! by Dave Clements-3
0
by Dave Clements-3
fastq quality trimmer by Tomaz Rijavec
2
by Dannon Baker-2
Put an apache password on galaxy? by Lee Katz
2
by Lee Katz
cufflink workflow by Peppe
1
by Jen Hillman-Jackson
Metagenome Analysis by Mike Dyall-Smith
1
by Jen Hillman-Jackson
Re: FW: problem using Depth of Coverage (GATK) by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Which "Library Type" should I use for single-end reads by Du, Jianguang-2
1
by Jen Hillman-Jackson
Barcode splitter on paired end reads by Veranja Liyanapathir...
0
by Veranja Liyanapathir...
Tool for changes in bedgraph files by Kristin Denise Kerno...
1
by Jen Hillman-Jackson
Prolonged - Job waiting to run by Veranja Liyanapathir...
1
by Jen Hillman-Jackson
min alignement count by Davide Degli Esposti
1
by Jen Hillman-Jackson
problem with GenomeSpace Exporter by ge2sasag
0
by ge2sasag
Internal Server Error and slow to refresh History by Gene Genome
1
by Jen Hillman-Jackson
raw count of genes by Els Willems
1
by Björn Grüning
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