Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
"View details" of Tophat alignment by Du, Jianguang-2
1
by Jeremy Goecks
sharing files and histories between different galaxy servers by Colaneri, Alejandro ...
1
by Jeremy Goecks
May 29th 2013 FTP login resolution by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
concatenating files in galaxy by Colaneri, Alejandro ...
1
by Jen Hillman-Jackson
Question on megablast databases by Sun, Wenping [USA]
3
by Jen Hillman-Jackson
obsolete cuffdiff version in main.g2.bx.psu.edu by Nikolay N.
1
by Jen Hillman-Jackson
BWA errors by Seattle Oneeechan
1
by Jen Hillman-Jackson
Unable to use FASTQ tool on Main over several days by Eduardo Fox
2
by Daniel Blankenberg
Problem to download mercurial egg by Marc DELOGER
0
by Marc DELOGER
(no subject) by Peppe
1
by Jen Hillman-Jackson
changing parameters in tophat by Colaneri, Alejandro ...
1
by Jen Hillman-Jackson
GCC2013 Early Registration ends this Friday, 24 May by Dave Clements-3
0
by Dave Clements-3
User -> Custom Builds fail on public server by Michael Axtell
2
by Michael Axtell
Raw counts from Galaxy by Els Willems
1
by Jen Hillman-Jackson
failed Tophat processing steps by Nikolay N.
1
by Jen Hillman-Jackson
Duplicate Accounts on Main by Dave Clements-3
1
by Dave Clements-3
receiving an email when a processing step finishes by Nikolay N.
2
by Dannon Baker-2
Dataset does not appear in a drop-down menu of a tool by Nikolay N.
1
by Jen Hillman-Jackson
Question on galaxy data visualization by Sun, Wenping [USA]
2
by Sun, Wenping [USA]
problem uploading txt data by Chunyu Liu
5
by Chunyu Liu
Jobs delay by Benjamin Leblanc
1
by Jen Hillman-Jackson
Query not starting by Neel Aluru
2
by Neel Aluru
A new version of the Genomic HyperBrowser has been released! by Sveinung Gundersen
0
by Sveinung Gundersen
Map with BWA for Illumina is hung by rmc7777
5
by Jen Hillman-Jackson
How to analyze the Encode RNA-seq data from UCSC genome browser with Galazy by Santagostino Marco
2
by Santagostino Marco
nebula problem by ge2sasag
1
by Jen Hillman-Jackson
Filter Fastq by rmc7777
3
by Jen Hillman-Jackson
problems with Tophat by Elwood Linney
3
by ge2sasag
Workflow not running by Lanelle Oni Edwards
1
by Jen Hillman-Jackson
Support for other Genomes in SNPeff by Diego Borges-Rivera
0
by Diego Borges-Rivera
Error in Tophat by lilach noy
1
by Jen Hillman-Jackson
Downloading files via FTP by lilach noy
2
by Geert Vandeweyer
purging deleted histories by s_hight
1
by Jen Hillman-Jackson
server error query by shreya ghosh
1
by Jen Hillman-Jackson
May 2013 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
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