Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Launching IGB from Galaxy by Seth Stern
1
by Jen Hillman-Jackson
Galaxy error by Toni Delorey
4
by Jen Hillman-Jackson
analysing pooled data with FreeBayes by Nicola Smith
2
by Erik Garrison
Rename tool output file in Galaxy by sachitad
7
by Ross-2
Cuffdiff2 by antoprajkumar
1
by Jen Hillman-Jackson
"Significant" in Cuffdiff's ouput by Hoang, Thanh
1
by Dave Clements-3
Trackster Error by Seth Stern
1
by Jen Hillman-Jackson
Exceptionally high RPKM values of miRNA and other short genes in Cuffdiff's output by Hoang, Thanh
3
by Hoang, Thanh
Problem with FTP by GANDRILLON OLIVIER
1
by Jen Hillman-Jackson
Amplicon Sequencing Questions by Seth Stern
1
by Jen Hillman-Jackson
database associated with galaxy server by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Problem with repeated genes in Cuffdiff's output by Hoang, Thanh
1
by Jen Hillman-Jackson
Emptying my account for good by GANDRILLON OLIVIER
1
by Jen Hillman-Jackson
Error running Metagenomic Analysis by Pavan Kumar
1
by Jen Hillman-Jackson
Evaluating TopHat's results by Hoang, Thanh
2
by Hoang, Thanh
Extreme Newbie Question by Seth Stern
1
by Jen Hillman-Jackson
bugs of snpSiftWrapper.pl corrected by Yufei LUO
0
by Yufei LUO
galaxy online difficulty? by eclare
1
by Jen Hillman-Jackson
command under the hood by Kaiyin Zhong (Victor...
0
by Kaiyin Zhong (Victor...
downloading problems from main Galaxy by Elwood Linney
1
by Jen Hillman-Jackson
barcode splitter files web based by aholtzmorris
4
by Ido Tamir
Cuffmerge error: duplicate GFF ID encountered by Delong, Zhou
2
by Delong, Zhou
problem uploading bam and bai files by aholtzmorris
1
by Jen Hillman-Jackson
hg19 with rCRS by rabab khairat
1
by Jen Hillman-Jackson
elandmulti format by Murphy, Theresa
1
by Jen Hillman-Jackson
Regarding galaxy wrappers: "lumi", "DESeq" "edgeR" by sachitad
2
by sachitad
How to define the cutoff value of RPKM for expressed genes? by Hoang, Thanh
1
by Jeremy Goecks
Problem with ftp server? by Katrien M. Devos
1
by Jen Hillman-Jackson
(no subject) by Dave Clements-3
0
by Dave Clements-3
Re: galaxy-user Digest, Vol 84, Issue 27 by Batool Akhtar-Zaidi
0
by Batool Akhtar-Zaidi
Pause function please by aholtzmorris
1
by Jen Hillman-Jackson
gft annotation files by nayaganviji
1
by Jen Hillman-Jackson
FASTQ quality stats & Bowtie by Sharmistha Majumdar
0
by Sharmistha Majumdar
Unable to start galaxy either via ami or https://main.g2.bx.psu.edu/cloudlaunch by bzeitner
0
by bzeitner
problem with GATK tools not accepting BAM file as input by Politz, Samuel M.
1
by Jen Hillman-Jackson
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