Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Downloading Output File thru FileZilla by Mark Edward Fabreag
2
by Geert Vandeweyer
Database of c_briggsae_WS230 for SnpEff by Fabrice BESNARD
1
by Jen Hillman-Jackson
jobrunner upload file by Jasper Jan Koehorst
1
by Jen Hillman-Jackson
FTP problem by Karen Schwarzberg
3
by Jen Hillman-Jackson
History & Visualization list empty by Benjamin Schuster-Bo...
1
by Jen Hillman-Jackson
after 'trim sequences', 'map w/Bowtie' job has been waiting for days to run by theresa-stueve
1
by Jen Hillman-Jackson
slow Galaxy server by Politz, Samuel M.
1
by Jen Hillman-Jackson
very slow server by Politz, Samuel M.
1
by Jen Hillman-Jackson
after 'trim sequences', 'map w/Bowtie' job has been waiting for hours by theresa-stueve
1
by Jen Hillman-Jackson
Loading Neurospora crassa genome database onto Galaxy. by Mr. Lai U Ming, Juli...
1
by Jen Hillman-Jackson
Inquiry on FastQC report by Ng Kiaw Kiaw
1
by Jen Hillman-Jackson
rattus norvegicus reference genome by Matthew Girgenti
1
by Jen Hillman-Jackson
Problem with ftp connexion to Galaxy by Fabrice BESNARD
2
by Jen Hillman-Jackson
Problem with downloading by GANDRILLON OLIVIER
1
by Jen Hillman-Jackson
SNPeff by Andréanne Morin
1
by Jen Hillman-Jackson
Filter fastq by percentage of ambiguous (N) bases by antoprajkumar
1
by Jen Hillman-Jackson
Re: Galaxy server down? by eclare
3
by Nate Coraor
Galaxy Log-In and DATA by Mersee Madison-Villa...
0
by Mersee Madison-Villa...
question by Larry Simpson
2
by Jen Hillman-Jackson
Using local files rather than uploading? by Joshua Orvis
1
by Peter Cock
Rename tool output file in Galaxy by sachitad
1
by Jen Hillman-Jackson
Fwd: HCC Mutations Workflow on Local Galaxy Instance by moritz
1
by Jen Hillman-Jackson
How to process paired reads in Galaxy by Larry Simpson
1
by Jen Hillman-Jackson
2014 Galaxy Training Survey by Dave Clements-3
0
by Dave Clements-3
Fwd: HCC Analysis Pipeline by Enis Afgan-2
0
by Enis Afgan-2
Whole Exome Somatic Gene Mutation Extraction by moritz
0
by moritz
Cuffdiff-cummerbund with biological replicates problem by mshamblott
2
by Jeremy Goecks
Bowtie: Outputting unmapped reads by Mayank Tandon
4
by Mayank Tandon
August 2013 Galaxy Update Newsletter is out by Dave Clements-3
0
by Dave Clements-3
Galaxy Proteomics mailing list by Ira Cooke
0
by Ira Cooke
how to find repeats with galaxy by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
viewing data live while tool is running by Ketan Maheshwari
1
by Peter Cock
HCC Mutations Workflow on Local Galaxy Instance by moritz
0
by moritz
Problem with SAM-to-BAM conversion by Fabrice BESNARD
3
by Fabrice BESNARD
Illumina Methylation tool in toolshed by sachitad
3
by Björn Grüning
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