Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Question about expression in Galaxy tools by John
2
by John
problem with bowtie by Law, Michael J.
3
by Jen Hillman-Jackson
exome-capture sequencing analysis tools? by Yan He
1
by Jen Hillman-Jackson
How to extract geneID from pileup file? by Yan He
1
by Jen Hillman-Jackson
Tophat2 not working? by Delong, Zhou
3
by Jen Hillman-Jackson
CloudMan console not responding by Deniz Erezyilmaz
2
by Enis Afgan-2
Galaxy Tool Version Question by Nixon, Scott Evan
1
by Björn Grüning-2
Uploading files to Cloudman by FTP by antoprajkumar
2
by Enis Afgan-2
Connecting to new Galaxy Cloudman by FTP by Mohammad Heydarian
4
by Enis Afgan
URL problem by Kucukural, Alper
0
by Kucukural, Alper
cloudman console not responding add/remove nodes by Deniz Erezyilmaz
1
by Dannon Baker-2
Very very slow response when a class is using Galaxy from a computer room in the university by Ido Carmel
2
by Dave Clements-3
Cuffdiff changes by Johanna Sandgren
3
by Jeremy Goecks
Clip by William Yarosh
2
by Jen Hillman-Jackson
How to get random region of 1000-bp window in the chromosome not overlapping specific [gtf] file by John
2
by John
tool within a tool by Ketan Maheshwari
1
by Peter Cock
Counts of mapped reads for each gene? by Yan He
5
by Yan He
Re: galaxy-user Digest, Vol 86, Issue 17 by Dannon Baker-2
1
by Jen Hillman-Jackson
customize tool display in the workflow by wizardfan
4
by wizardfan
Question about Extract intron sequences from [gtf file] + [genome FASTA file] by John
2
by John
genome not available on galaxy by Law, Michael J.
1
by Jen Hillman-Jackson
Questions about column output in Operate on genomic Intervals -> Profile Annotations by James Wagner
3
by Jen Hillman-Jackson
Uploading via FTP problem by Delong, Zhou
1
by Jen Hillman-Jackson
Is anyone using Galaxy with NeuroScience ? by Zeeshan Ali Shah
3
by Zeeshan Ali Shah
Questions regarding Galaxy Tool XML File by Marian Thieme
0
by Marian Thieme
Name workflow output dynamically on input name by Daniel Gorelik
1
by Jen Hillman-Jackson
Egg build failed for numpy 1.6.0 by lahcen campbell
3
by Nate Coraor
ftp access on https://test.g2.bx.psu.edu/ by Amit Pande-2
1
by Jen Hillman-Jackson
adding reference genome by nayaganviji
1
by Jen Hillman-Jackson
Join the HOMER Galaxy wrapper development! by Björn Grüning-2
0
by Björn Grüning-2
Galaxy Distribution Aug 12, 2013 by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
how to add settings of TMPDIR=/scratch for sge/drmaa in universe_wsgi.ini by tin h
0
by tin h
fastq file generated by SAMTOOLS can't be recognized by Mark Edward Fabreag
1
by Jen Hillman-Jackson
Grooming on Galaxy by Scott Tighe
1
by Jen Hillman-Jackson
(no subject) by Meabh Beatty
1
by Björn Grüning-2
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