Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
miRNA analysis by Hoang, Thanh
2
by Hoang, Thanh
estimating galaxy on the cloud needs for RNAseq by Elwood Linney
1
by Jen Hillman-Jackson
Slice bam by lilach noy
1
by Jen Hillman-Jackson
How to calculate GC content of transcripts only including exons from a GTF file by John
2
by John
About "Slice BAM" tool by Yan He
1
by Jen Hillman-Jackson
Questions about MEME & Sequence logo generator by Boaz Shaanan-2
1
by Jen Hillman-Jackson
What's the PV of Galaxy by liubiao
1
by Jen Hillman-Jackson
MACS on galaxy not responding by Amit Pande-2
1
by Jen Hillman-Jackson
Re: FTP Error 530 Sorry, the maximum number of clients (3) for this user are already connected. by Jen Hillman-Jackson
3
by Sobrera, Edwin
problem with cuffdiff by Peppe
1
by Jen Hillman-Jackson
Unable to visualize the Tophat accepted hits by Trackster tool by Pinkuan
2
by Jen Hillman-Jackson
CloudMap by Isaac Knoflicek
2
by Isaac Knoflicek
display at ucsc error by lilach noy
1
by Hiram Clawson
extension of read length by Tobias Hohenauer
1
by Jen Hillman-Jackson
(no subject) by Maria Hoffman
1
by Jen Hillman-Jackson
Data sources don't load in Firefox by Ganote, Carrie L
1
by Jen Hillman-Jackson
FASTQ joiner by lilach noy
1
by Anton Nekrutenko-2
error message from Filezilla by Amit Pande-2
1
by Nate Coraor
cannot download data to Galaxy by Elwood Linney
1
by Nate Coraor
GATK error Argument with name 'T' isn't defined by Erica Westerman
0
by Erica Westerman
Galaxy main server down? by Boaz Shaanan-2
3
by Jen Hillman-Jackson
Zooming in and out in Circster by Ian Donaldson
1
by Jen Hillman-Jackson
Bam QC and coverage by shamsher jagat
4
by shamsher jagat
For constructing workflow of workflows by patra
4
by patra
version_command tag problem by wolma
1
by Jen Hillman-Jackson
NoClassDefFoundError in Picard Paired Read Mate Fixer by Nicolas Quizon
1
by Jen Hillman-Jackson
Fwd: About empty no peek problem by XiaoTao Jiang
5
by Björn Grüning-2
About tool classify in the tool box panel by XiaoTao Jiang
1
by Björn Grüning-2
Tophat Error: segment-based junction search failed with err by Delong, Zhou
1
by Jen Hillman-Jackson
watching command line to a query by lilach noy
7
by srinivas
August 2013 Galaxy Update Newsletter is out by Dave Clements-3
0
by Dave Clements-3
Subtract Whole Dataset by lilach noy
1
by Jen Hillman-Jackson
Which Input FASTQ quality scores type should I choose when run FASTQ Groomer? by Du, Jianguang-2
1
by Jen Hillman-Jackson
Barcode Splitter Problem by Priyanka Vengurlekar
1
by Jen Hillman-Jackson
Error "out of memory" when trying to retrieve output by Delong, Zhou
2
by Delong, Zhou
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