Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
questions during using the local Galaxy by Xianjun Dong
1
by Greg Von Kuster
running galaxy with SGE by Chris Cole
2
by Nate Coraor
Query on UCSC Genome Browser software by akatiyar
0
by akatiyar
accessing data from the filesystem by James Casbon
4
by Greg Von Kuster
patch: use xml includes when parsing xml by James Casbon
0
by James Casbon
LaunchDaemon for OS X by James Casbon
0
by James Casbon
several questions from newbie by Xianjun Dong
2
by Greg Von Kuster
Install problems on OS X with python from macports by James Casbon
6
by James Casbon
Re: local sequence storage] by Greg Von Kuster
4
by Michael Rusch
linking into galaxy by Michael Rusch
3
by Nate Coraor
workflow support in local instance by Michael Rusch
1
by James Taylor-2
newbie questions by Michael Rusch
1
by Nate Coraor
Re: galaxy-user Digest, Vol 26, Issue 6 by Ross-2
0
by Ross-2
megablast by Ali Tofigh
1
by Anton Nekrutenko
[GALAXY] Galaxy Workflows are Here by Anton Nekrutenko
0
by Anton Nekrutenko
New Tool Question - how to copy meta data from input to output? by Assaf Gordon
3
by Assaf Gordon
Problems upgrading to mercurial by Assaf Gordon
0
by Assaf Gordon
Galaxy source repository change by Nate Coraor
3
by Nate Coraor
Importing features from BioMart by Alexandre Gattiker
4
by Alexandre Gattiker
Synteny by Claudio Casola
1
by Anton Nekrutenko
Lift-Over update with orangutan assembly by Claudio Casola
1
by Greg Von Kuster
Interfacing galaxy with a local copy of the UCSC genome browser by Tim Yu
1
by Greg Von Kuster
How to get output from Galaxy by i rezwan
1
by Anton Nekrutenko
local sequence storage by Rochak Neupane
2
by David Goodstein
TFBS search by Anton Nekrutenko
0
by Anton Nekrutenko
galaxy query by Whiteley, Gareth
2
by Anton Nekrutenko
Storing compressed data files by Assaf Gordon
2
by Greg Von Kuster
Two Administration questions by Assaf Gordon
1
by Greg Von Kuster
admin password? by Davide Cittaro
1
by Greg Von Kuster
TFBS search by Tony Oosterveen
0
by Tony Oosterveen
Looking For Tool DTD by Scott Kuehn
1
by Anton Nekrutenko
Sharing HIstories? by Jacob Biesinger
1
by Greg Von Kuster
filter of 3'UTR conserved sequences by Naum Gershenzon
2
by Anton Nekrutenko
feature requests by Belinda M. Giardine-...
0
by Belinda M. Giardine-...
generating random sequences by xu_jianzhen
1
by Daniel Blankenberg
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