Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
add nglims to galaxy-dist by Peter Huang
5
by Brad Chapman
Can TopHat take SNPs into account? by Hoang, Thanh
1
by Jen Hillman-Jackson
TopHat by Kumar Sankaran
1
by Jen Hillman-Jackson
queue rules for multi-step workflows by zrudicka
3
by Jen Hillman-Jackson
Please save these dates! GCC2014: June 30 - July 2 by Dave Clements-3
0
by Dave Clements-3
URL problem by Kucukural, Alper
2
by Kucukural, Alper
Re: SNP calling problems (Jennifer Jackson) by garzetti
1
by Jen Hillman-Jackson
Tophat Error: segment-based junction search failed with err by Delong, Zhou
1
by Jen Hillman-Jackson
Bioinformatics Training Course in Portugal by Pedro Fernandes
0
by Pedro Fernandes
question about samtools in Galaxy by Robert Jackman
1
by Jen Hillman-Jackson
Galaxy STARTUP ERROR! by giovanni pascarella
0
by giovanni pascarella
main galaxy server is down? by Boaz Shaanan-2
3
by Jen Hillman-Jackson
problem with logging in after resetting password by Siew-Lan Ang
0
by Siew-Lan Ang
bwa indexing not automatic? by Joshua Orvis
1
by Jen Hillman-Jackson
main galaxy server is down? by garzetti
1
by Jen Hillman-Jackson
October Galaxy Update Newsletter is out by Dave Clements-3
0
by Dave Clements-3
Built-in Editor by Isaac Knoflicek
1
by Jen Hillman-Jackson
How to become admin on Galaxy Cloudman by Yan He
2
by Yan He
SNP calling problems by garzetti
1
by Jen Hillman-Jackson
database of known ChIP-seq peaks by Bogdan Tanasa
1
by Jen Hillman-Jackson
cleanup_datasets.py with postgresql 8.1 by Malcolm Tobias
1
by Jen Hillman-Jackson
generating pileup with max depth greater than 8000? by Lauren Oldfield
2
by Dominique Belhachemi
Trying to visualize 2 bam files from Galaxy by Ben Gift
2
by svosberg
Variant Annotation in GATK tools by Yan He
1
by Jen Hillman-Jackson
question by Bondici, Ibi
1
by Jen Hillman-Jackson
Stitch MAF blocks by Jennifer Di Tommaso
3
by Jen Hillman-Jackson
de novo RNA-Seq workflow by Carlos Canchaya
1
by Jen Hillman-Jackson
History will not load? by Maria Hoffman
2
by Jen Hillman-Jackson
Re: your video of using cloudman by Anton Nekrutenko-2
0
by Anton Nekrutenko-2
Secure file upload gateway for Galaxy by Georgios Magklaras
2
by James Taylor-3
non-coding RNA annotation by Hoang, Thanh
1
by Jen Hillman-Jackson
Galaxy Main - Files not Found, Server Error by Yardley, Nathan
1
by Jen Hillman-Jackson
RNA-DNA converter in Fasta format by Hoang, Thanh
2
by Hoang, Thanh
3' adapter trimming using FASTX-toolkit clipper by Hoang, Thanh
3
by Jen Hillman-Jackson
Identifying Tags - Galaxy Question by D. A. Cowart
2
by Jen Hillman-Jackson
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