Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
mm7 chromosome name by Kreiling, Jill
3
by Jen Hillman-Jackson
Tool XML form building bug with <options from_data_table="..."> ? by damion@learningpoint...
2
by Jen Hillman-Jackson
Server down by Suhana
1
by Jen Hillman-Jackson
Trackster Error: needLargeMem: trying to allocate 0 bytes (limit: 100000000000) by Guest, Simon
3
by Guest, Simon
bacterial metatranscriptomes by Soren Franzenburg
1
by Jen Hillman-Jackson
SOLID RNA-Seq De Novo Transcriptome Assembly by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
SFTP for local galaxy instance? by ASL
1
by Jen Hillman-Jackson
'Could not connect to server' by leontovich.alexey@ma...
2
by Dannon Baker-2
Re: [galaxy-dev] Bam File by Jeremy Goecks
0
by Jeremy Goecks
inconsistant error messages on disk quota? by francis
5
by francis
posting supplementary information on galaxy server by Jainy Tharun
2
by Robert Curtis Hendri...
problems in transitioning from Tophat to Cuffdiff by Elwood Linney
5
by Nate Coraor
Issues on RNAseq since the changeover by Elwood Linney
1
by Nate Coraor
Re: Registration is Open for December Bioinformatics Bootcamps at UC Davis! by Dave Clements-3
0
by Dave Clements-3
Need your helps about Galaxy by Lei Yan
21
by Jen Hillman-Jackson
can I use GlobusOnline to transfer data to the usegalaxy server instead of ftp by Hazard, E. Starr
1
by Nate Coraor
Cufflinks Help by Thomas, Mervyn G. (D...
1
by Jen Hillman-Jackson
problem running Augustus by Claudio Slamovits
2
by Björn Grüning
portal to galaxy restricted by Elwood Linney
12
by Scott Tighe
Free Training (Boston): Analyzing NGS Data with Galaxy by Anushka Brownley
1
by Anushka Brownley
Importing reference genome into Galaxy for Tophat2 by StanW
1
by Jen Hillman-Jackson
miRNA-seq help by Gabriel Calvin
6
by Jen Hillman-Jackson
New cuffdiff- no result files by Johanna Sandgren
2
by Jen Hillman-Jackson
unable to import run or save-to-file published workflow after galaxy upgrade by McCulloch, Alan
2
by Jeremy Goecks
Tophat for Illumina - built-in dog genome mislabelled by Court, Michael
1
by Jen Hillman-Jackson
Trouble viewing History from a particular laptop by Olivia Choudhury
1
by Jen Hillman-Jackson
Problems processing histories existing on galaxy before the changeover by Elwood Linney
1
by Jen Hillman-Jackson
Online galaxy turning everything red on RNAseq steps by Elwood Linney
2
by Nate Coraor
Empty bowtie2 output by Mikel Egaña Arangure...
1
by Jen Hillman-Jackson
Galaxy available disk space bug by Itys Comet
1
by Jen Hillman-Jackson
replace function on galaxy by Xianrong Wong
1
by Jen Hillman-Jackson
How to lauch bulit cluster on Cloudman? by Yan He
1
by Dannon Baker-2
Adding a tool to Galaxy Main Server by Hamid Reza Hassanzad...
1
by Jen Hillman-Jackson
Fwd: Exome Sequencing Analysis by Johnathan Cooper-Kno...
1
by Jen Hillman-Jackson
galaxy cloud: location of imported and converted fastq's by vedellpt
1
by Dannon Baker-2
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