Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
human genome latest annotaiton by Irene Bassano
1
by Jen Hillman-Jackson
Problems with Picard and GATK tools by garzetti
0
by garzetti
Cufflinks returned 0 value in all RPKMs by Ly, Dao
2
by Jen Hillman-Jackson
Transcriptome Hypericum perforatum by miroslav.sotak
2
by Jen Hillman-Jackson
help for trim sequences by Seung Hee Cho
6
by Jen Hillman-Jackson
Identifying Genes by Loupe, Jacob M.
1
by Jen Hillman-Jackson
Read_group_tracking files are not enough for cummerbund visualisations on replicates? by Mondongho
1
by Jen Hillman-Jackson
Quantmap output issue (chemical names are truncated and cannot be differentiable from each other) by Hsieh, Jui-Hua (NIH/...
1
by Jen Hillman-Jackson
compute an expression on every row question by Tobias Hohenauer
1
by Jen Hillman-Jackson
new cuffdiff with readgroup problem by Johanna Sandgren
5
by Johanna Sandgren
Mean inner distance by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
bowtie2 by mark.rose
1
by Jen Hillman-Jackson
Blast on Galaxy? by Jorge Braun
2
by Jorge Braun
Cuffdiff question by Jen Hillman-Jackson
10
by Irene Bassano
how to add openstack in biocloudcentral ? by Zeeshan Ali Shah
2
by Jen Hillman-Jackson
Setting a queue for torque submission by Xian Su
1
by Jen Hillman-Jackson
make publish histories only available to specific users by mark.rose
1
by Jen Hillman-Jackson
Re: Botryllus genome by Enis Afgan-3
1
by Jen Hillman-Jackson
Tophat2 (version 0.6) by Roberta Galletti
1
by Jen Hillman-Jackson
How to lower disc usage in order to resume workflow by Chris Farnet
1
by Jen Hillman-Jackson
multiple output tool in workflow by wizardfan
1
by Jen Hillman-Jackson
Quality report by Skittles
9
by Nate Coraor
How do I import protein coding genes location from UCSC? by hsharm03
1
by Jen Hillman-Jackson
Galaxy Pages - importing/downloading embedded data. by Mohammad Heydarian
2
by Mohammad Heydarian
conditional statement in compute tool by leontovich.alexey@ma...
1
by Jen Hillman-Jackson
Bowtie raw input by Jonathan Glass
2
by Jonathan Glass
problems with TOPHAT in Galaxy by Amit Pande-2
1
by Jen Hillman-Jackson
Contents of a SAM file by Skittles
3
by Mohammad Heydarian
Coding and non coding exons by Skittles
1
by Jen Hillman-Jackson
Re: galaxy-user Digest, Vol 89, Issue 4 by Cory Dunn
1
by Jeremy Goecks
Cuffdiff version not apparent by Cory Dunn
1
by graham etherington (...
Nov 04, 2013 Galaxy Distribution by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Re: Galaxy's Tophat 2 -GTF option by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Grouping Histories into related Projects by Avery DeVries
1
by Dannon Baker-2
November 2013 Galaxy Update Newsletter by Dave Clements-3
0
by Dave Clements-3
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