Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Fwd: de novo assembly by John Nash-2
0
by John Nash-2
Add library to dataset performance metric: developer vs production instances by Roman Valls Guimera
2
by Duddy, John
de novo assembly by Cecilia Tamborindegu...
2
by Jeremy Goecks
Server error by Karthik R Padmanabha...
1
by Jen Hillman-Jackson
problem mapping 454 reads in fastq format using LASTZ by Chris.Howard
1
by Jen Hillman-Jackson
Gro-seq! and Galaxy by Di Nguyen
1
by Jen Hillman-Jackson
Adding new genomes to Galaxy by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Manipulate FASTQ question by graham etherington (...
1
by Jen Hillman-Jackson
Indel analysis by Golbus, Jessica
1
by Anton Nekrutenko
October 2011 Events by Dave Clements-3
0
by Dave Clements-3
Problem in merging two BAM file in Galaxy. Thanks for help. by Binbin You
1
by Jen Hillman-Jackson
Galaxy and Ion Torrent by cuentasecuenciacion
2
by Anton Nekrutenko
(no subject) by raghava rao
0
by raghava rao
Accessing Galaxy on the cloud from http by Colleen Doherty
7
by Colleen Doherty
How to analyze Genes Differential Expression using Galaxy? Thanks. by Binbin You
1
by Jen Hillman-Jackson
Question by dtrejo
2
by Jen Hillman-Jackson
Re: mm9 reference GTF file for Cuffcompare (shamsher jagat) by Lozach, Jean
0
by Lozach, Jean
Galaxy Architecture Documentation by Oren Livne
8
by Nate Coraor
mm9 reference GTF file for Cuffcompare by shamsher jagat
0
by shamsher jagat
fasta-Cuffcompare by dongdong zhaoweiming
1
by Jeremy Goecks
Chip-seq by shamsher jagat
1
by Ido Tamir
Simulating sequencing and removing redundant sequences by Daniel Sher
5
by Kevin Lam-2
(no subject) by raghava rao
0
by raghava rao
mailing list by Sinnakaruppan MATHAV...
0
by Sinnakaruppan MATHAV...
Getting (or setting) physical file name by Paul-Michael Agapow
1
by Peter Cock
galaxy test-data organization by Joseph Hargitai
2
by Jen Hillman-Jackson
cufflinks version by Shantanu Pavgi
1
by Jen Hillman-Jackson
Merging of illumina paired end files by Arun Khattri
1
by Jen Hillman-Jackson
Re: Upload of most recent genome data for Apis mellifera onto Galaxy and/or NCSC web sites? by Anton Nekrutenko
2
by Diana Cox-Foster
How to use GATK Unified Genotyper with "A list of genomic intervals over which to operate" option by cjav
1
by Jen Hillman-Jackson
Help with sam to bam by Zachary A Lewis
3
by Jen Hillman-Jackson
Trinity by David Joly
1
by Jen Hillman-Jackson
Help with sam to bam (Zachary A Lewis) by Pandey, Ashutosh
1
by Jen Hillman-Jackson
How to clip multiple adapter sequences in Penn State Galaxy? Thank. by Binbin You
1
by Jen Hillman-Jackson
MACs by Keith Giles-2
0
by Keith Giles-2
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