Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Splitting a file by Daniel Sher
1
by Hans-Rudolf Hotz
using lastz by N. Walsh
1
by Jen Hillman-Jackson
My tophat jobs are stuck in the queue by Daniel Lundin
2
by Jen Hillman-Jackson
Problem starting galaxy on Cygwin by Oren Livne
0
by Oren Livne
11. Question about formatting mouse (mm9) GTF (shamsher jagat) (galaxy-user Digest, Vol 64, Issue 11) by Lozach, Jean
0
by Lozach, Jean
Question about formattung mouse (mm9) GTF by shamsher jagat
1
by Jen Hillman-Jackson
tophat error by zohra saci
3
by zohra saci
CompleteGenomics publicly available genomes. by Melissa A. Wilson Sa...
1
by Ronald Worthington
SNP and INDEL detection by Gabriela Ronquillo-L...
1
by Jen Hillman-Jackson
Q about 'Compute' tool by Ian Donaldson
6
by Jen Hillman-Jackson
version tophat and cufflinks by dongdong zhaoweiming
1
by graham etherington (...
select tophat and cufflinks by dongdong zhaoweiming
0
by dongdong zhaoweiming
Cost by Lizex Husselmann
3
by Roman Valls Guimera
Problem uploading files to Cloudman Galaxy by Kevin Williamson
0
by Kevin Williamson
Subscribing to Job Status Events by Oren Livne
1
by Dannon Baker
QUESTION by dtrejo
1
by Jen Hillman-Jackson
Possible to browse local filesystem by alessandro albiero
1
by graham etherington (...
Adding new tools in Galaxy by Makis Ladoukakis
3
by Dannon Baker
How to count reads in 200bp windows and save the output per chromosome? by Di Nguyen
2
by Jen Hillman-Jackson
data libraries by Hilary Morrison
3
by Jen Hillman-Jackson
Galaxy-Condor Permission Denied by Oren Livne
6
by Nathan Panike
Re: [galaxy-bugs] loading data by Peng, Tao
31
by Jeremy Goecks
Does Cuffdiff support multiple groups analysis by An, Hongyan
3
by An, Hongyan
1000 genome variant calls by Jen Hillman-Jackson
1
by Richard Mark White
aligning long reads by Shalabh Sharma
2
by Bob Harris
Macs by Keith Giles
1
by Jen Hillman-Jackson
BED to BAM conversion in Galaxy by shamsher jagat
8
by Jen Hillman-Jackson
extracting 18S rRNA sequence by Adam Stell
1
by Jen Hillman-Jackson
Deletions by Laura Reinholdt
2
by Jen Hillman-Jackson
RNAseq for Solid data by Di Kim Nguyen
3
by Jen Hillman-Jackson
SamTools processing issue by Golbus, Jessica
1
by Jen Hillman-Jackson
SNPEff 2.0.2 Wrapper Problem / Partial Fix by John David Osborne
0
by John David Osborne
upload zip file to custom tool by Brent Pedersen
5
by Jen Hillman-Jackson
sequence analysis full tutorial by frederic lepretre
1
by Jen Hillman-Jackson
non-coding RNA by dongdong zhaoweiming
1
by Jen Hillman-Jackson
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