Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Over disk quota by GANDRILLON OLIVIER
5
by Nate Coraor
sample for video for example 3 in ngs analyses in galaxy by Linda McMahan
0
by Linda McMahan
reducing size on disk to comply with quotas by Patrick Kenneth Gonz...
1
by Nate Coraor
Cistrome by Albena Pramatarova, ...
1
by Jen Hillman-Jackson
October 25, 2011 Galaxy Development News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
FASTQ Quality Trimmer for PE Illumina? by Kuehn, Joanna S [V M...
1
by Florent Angly
Sequences are not currently available for the specified build by Mark Silby
1
by Jen Hillman-Jackson
Extract genomic DNA-strand information is not recognized by Sarah
1
by Jen Hillman-Jackson
Re: data sizes & delete vs delete permanently by Jen Hillman-Jackson
1
by Jen Hillman-Jackson
Re: Reducing overall data footprint by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Galaxy Main public instance: data and job quotas by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Permissions and private roles by Anthony Underwood
10
by Anthony Underwood
tool.xml "&>" console redirection within command-tag by Appelt, Uwe
6
by Appelt, Uwe
analysis of 454 data by bassanio
3
by bassanio
Can we continue the workflow from some of the steps? by Cinto Queky
1
by Jen Hillman-Jackson
tool config file: multi-select for files? by Appelt, Uwe
1
by Daniel Blankenberg
one error while installing galaxy by Li, Jilong (MU-Stude...
1
by Li, Jilong (MU-Stude...
How to use Galaxy by Boaz iga
1
by Anton Nekrutenko
Get only repeatmasked exons by Managadze, David (NI...
1
by Anton Nekrutenko
save/export image from workflow editor? by Casey Bergman
1
by Anton Nekrutenko
Issue about uploading data by Nandan Deshpande
1
by Dannon Baker
Zoom function on workflow editor? by Arthur Goldberg
1
by Dannon Baker
bed12 format for stitching blocks given a set of coding exon intervals by Amit Indap
1
by Daniel Blankenberg
Query regarding RNA-Seq data analysis by santhi ramachandran
1
by Jen Hillman-Jackson
Posting in the List by santhi ramachandran
0
by santhi ramachandran
How to combine two Reference Genome (Files) In Galaxy? by Binbin You
1
by Jen Hillman-Jackson
Regarding perl script by Shambhavi Srivastava
1
by Daniel Blankenberg
Memory issues while using Galaxy by prashant singh
1
by Daniel Blankenberg
Data files for Gencode Partition tool by Harald Dahle
0
by Harald Dahle
question about sorting barcoded sequences by Qingquan Liu
1
by Jen Hillman-Jackson
passing the url for ucsc browser (send output to galaxy) by Joseph Hargitai
0
by Joseph Hargitai
Problem with new tool shed by Florent Angly
8
by Florent Angly
Problem with Cuffcompare by Chandu Galaxy
5
by Jeremy Goecks
customizing mm9 mouse reference genome and then using that as the ref genome when uploading Illumina data by Christopher Callaway
1
by Jen Hillman-Jackson
Problem in randomly selecting sequences? by Daniel Sher
4
by Jen Hillman-Jackson
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