Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
https://galaxy.jgi-psf.org/ by Chauhan, Archana
2
by Jen Hillman-Jackson
trimming by dtrejo
1
by Jen Hillman-Jackson
Trouble in extracting species on maf imported from UCSC by 4urelie K
2
by Jen Hillman-Jackson
Asynchronous data source by Joachim Baran
3
by Joachim Baran
Lastz by Andrew South
4
by Nate Coraor
generic filenames with Export to File by Danielle Lemay
2
by Jeremy Goecks
(no subject) by gaurav thareja
0
by gaurav thareja
Cufflinks Annotation problem by Bidwell, Christopher...
2
by Xiangming Ding
Adding new data source by Joachim Baran
0
by Joachim Baran
MA2C peak calling or nimbelgen chip on chip analysis by shamsher jagat
1
by Jen Hillman-Jackson
BWA question on Mac OS X 10.7.2 by Christopher Callaway
1
by Jen Hillman-Jackson
my data files are missing from drop down menus by Maya Kasowski
1
by Dannon Baker
Question about file formats by Rena Zheng
1
by Peter Cock
Genetrack-Indexer/PeakPredictor by Stefanie Ververs
3
by Daniel Blankenberg
Deleting a Galaxy User by Oren Livne
1
by Jen Hillman-Jackson
Question about building a reference genome index using Bowtie by William Light
0
by William Light
visualization by wu yijin
1
by Jen Hillman-Jackson
Galaxy local install problems understanding where to put mouse ref seq data to populate ref genome in BWA by Christopher Callaway
1
by Jen Hillman-Jackson
TopHat/Cufflinks visualization by Alessia D
2
by Jen Hillman-Jackson
Application error by Palmer, Sarah
1
by Ross-2
selecting reads at random from fastq file by Austin Paul
9
by Kevin Lam-2
more on varying number of output files in xml by Nicholas Robinson
1
by Ross-2
CEAS in Galaxy by shamsher jagat
3
by Jen Hillman-Jackson
fastq joiner problem by Matthew Herron
2
by Jen Hillman-Jackson
adaptor trimming by Soetkin Versteyhe
1
by Jen Hillman-Jackson
Data gets deleted from public server by shamsher jagat
5
by Jen Hillman-Jackson
Cufflink error by Lizex Husselmann
1
by Jen Hillman-Jackson
SNPeff tool? by Laura Elizabeth Spoo...
5
by Chorny, Ilya
Cuffcompare error by Alessia D
1
by Jen Hillman-Jackson
number of concurrent jobs/user by Petr Novak
0
by Petr Novak
(no subject) by Xiangming Ding
0
by Xiangming Ding
Bed to Wiggle? by shamsher jagat
1
by Jen Hillman-Jackson
BWA install problem by Christopher Callaway
1
by Jen Hillman-Jackson
Question about Cuffdiff by Alessia D
1
by Jen Hillman-Jackson
Removal of duplicates and Cufflinks usage by Lizex Husselmann
1
by Jeremy Goecks
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