Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
upload files by Bao-Hua Song
1
by Jen Hillman-Jackson
public interface issues by Cittaro Davide
4
by Jen Hillman-Jackson
Re: problems loading galaxy histories by Dave Clements-3
2
by Jen Hillman-Jackson
Define a path for the command files by Toqa Manasrah
2
by Jen Hillman-Jackson
there was a wrong link in my previous mail - gtf file issues by Noa Sher-2
7
by Hiram Clawson
Problem creating GTF file for use with cufflinks by Noa Sher-2
0
by Noa Sher-2
Galaxy-Announce: A new, moderated, low-volume Galaxy Mailing List by Dave Clements-3
0
by Dave Clements-3
Chip-seq data by Giuseppe Petrosino
1
by graham etherington (...
mapping tags by Soetkin Versteyhe
1
by Jen Hillman-Jackson
Patch for better FASTQ description handling by Florent Angly
8
by Florent Angly
Postdoctoral opening in College Park by Charles Delwiche
0
by Charles Delwiche
Unable to run SICER or Find Peaks by Anupam Paliwal
2
by Daniel Blankenberg
Re: Names for genes in RNA-Seq analysis (Emilie Chautard) by Emilie Chautard
2
by Daniel Sher
'Draw quality score Boxplot' error by Caroline Proux
3
by Peter Cock
barcode splitter and clustering analyses? by Simon Bulman
1
by Jen Hillman-Jackson
An update to Galaxy CloudMan by Enis Afgan
1
by Ravi Madduri
Question regarding: FASTQ Quality Trimmer by Rahul Kanwar
1
by Daniel Blankenberg
Error running tool by Toqa Manasrah
0
by Toqa Manasrah
Galaxy Upload tool by Toqa Manasrah
0
by Toqa Manasrah
Upload executable in galaxy by Giota Kottara
0
by Giota Kottara
Galaxy test won't run a bwa job by cjav
4
by cjav
tools for exome sequence by shamsher jagat
0
by shamsher jagat
Using Galaxy Cloudman for a workshop by Clare Sloggett
7
by Clare Sloggett
Save These Dates! July 25-27: Galaxy Community Conference by Dave Clements-3
2
by Jen Hillman-Jackson
Running shell script by Toqa Manasrah
0
by Toqa Manasrah
November 18, 2011 Galaxy Development News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Fwd: BioMart - DATABASE Special Issue by Arek Kasprzyk
0
by Arek Kasprzyk
Gene Ontology Help by Nicole Lynn Jacobs
0
by Nicole Lynn Jacobs
combine data by dongdong zhaoweiming
2
by Jen Hillman-Jackson
GATK by Metge, Franziska
2
by Daniel Blankenberg
Tools appearing without inputs in workflow editor by Paul-Michael Agapow
0
by Paul-Michael Agapow
Changing Bowtie parameters in TopHat by Jeremy Coate
3
by Jeremy Goecks
RV: Visual and Conputational Analysis of positive sites in chip-chip data by Mónica Pérez Alegre
2
by shamsher jagat
clipping from 5' end by Soetkin Versteyhe
2
by Jen Hillman-Jackson
Regarding .exe file by Shambhavi Srivastava
1
by graham etherington (...
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