Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
retaining or reclaiming bed ids by Gold, Bert (NIH/NCI)...
1
by Jen Hillman-Jackson
Problems when analyzing my data by Yitian Xu
1
by Jen Hillman-Jackson
Chrdecoy error in trackster by doanea@mskcc.org
1
by Jen Hillman-Jackson
Problems with Galaxy 101 Tutorial by Lance Parsons-2
2
by Jen Hillman-Jackson
Transferring data to a different account by Yona Kim
1
by Jen Hillman-Jackson
upload mm10 genome by Noa Novershtern
1
by Jen Hillman-Jackson
January 2014 Galaxy Update Newsletter by Dave Clements-3
0
by Dave Clements-3
EdgeR returning empty output by antoprajkumar
1
by Jen Hillman-Jackson
GCC2014 Training Day: Topic Nomination is now open by Dave Clements-3
1
by Dave Clements-3
Error running CCAT test by Nicolas Lapalu
1
by Jen Hillman-Jackson
problem reimporting histories by Alessandro Ogier
1
by Jen Hillman-Jackson
Velvet-galaxy by Jorge Braun
1
by Jen Hillman-Jackson
Assembly of Paired and Unpaired sequences by Prash
2
by Prash
fastqc and blast? by Jorge Braun
6
by Jen Hillman-Jackson
CEAS/Transcription Factor Binding sites by Skittles
1
by Jen Hillman-Jackson
Estimated Fragment Lenghth/FDR by Skittles
1
by Jen Hillman-Jackson
Which tool to use for extract exon, codon information by Tomaszewicz, Keith
1
by Jen Hillman-Jackson
inconsistent BAM-to-SAM behavior by mmason
1
by Jen Hillman-Jackson
Workflow does not run by garzetti
1
by Jen Hillman-Jackson
My Galaxy runs are still not starting by Afazja - mpm
1
by Jen Hillman-Jackson
How to filter the sequences containing not[ATCG] character? by John
4
by John
Empty bowtie2 output by IIHG Galaxy Administ...
1
by Jen Hillman-Jackson
Problem with executable file in FastQC by Jorge Braun
3
by Jen Hillman-Jackson
Trackster Error chrom/?.len , No such file or directory by Jasper Jan Koehorst
1
by Jeremy Goecks
.Bam file upload and use problem by lucer105
1
by Jen Hillman-Jackson
Re: Question on uploading and use .bam files by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Is there a problem with jobs on Galaxy today? by Ruth Eberhardt
1
by Jen Hillman-Jackson
jobs not running by Ruth Eberhardt
1
by Nate Coraor
Peak annotation with Galaxy by Wooi Lim
3
by Jen Hillman-Jackson
SNP finding by Xiefan Fang
9
by Fabrice BESNARD
FW: [galaxy-bugs] Galaxy tool error report from bsib@leeds.ac.uk by Irene Bassano
1
by Jen Hillman-Jackson
tophat issues by miroslav.sotak
1
by Jen Hillman-Jackson
Problem loading BAM into IGV browser - invalid GZIP header error message by svosberg
3
by svosberg
ChIP-Seq Normalization to total number of reads by Wooi Lim
1
by Björn Grüning
December 2013 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
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