Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
DIAL by Jeremy Andersen
0
by Jeremy Andersen
transformation fastq files by Florian Peschke
1
by Ido Tamir
Merge FASTQ Databases by Edward Turk
4
by Dannon Baker
CloudMan Launch Page - Hanging by greg
6
by greg
Clip adapter sequences by Fransisc Raul Kantor
1
by Jen Hillman-Jackson
Adding "read group" tag by Eric Guo
1
by Jen Hillman-Jackson
How to find out SNPs and point mutations in RNA-Seq data using Galaxy? by Wei Liao
2
by Jeremy Goecks
CloudMan - Galaxy - How does sharing work? by greg
3
by Dannon Baker
How to add a tool to Cloud Galaxy by Greg Edwards
2
by Greg Edwards
Galaxy @ PAG 2012 by Dave Clements-3
0
by Dave Clements-3
Requesting uploading of genomes by kjmcdow
1
by Jen Hillman-Jackson
Error Handling in Galaxy Workflows ? by John Major
1
by Jen Hillman-Jackson
Default Display replicate libraries with different colors by Eric Guo
1
by Jen Hillman-Jackson
Make Galaxy continue running when i close the browser by Makis Ladoukakis-2
2
by Jeremy Goecks
Problem with <version_command> XML tag by Greg Edwards
1
by Peter Cock
Config info for: Problem with <version_command> XML tag by Greg Edwards
0
by Greg Edwards
ftp upload by Gabor Bartha
1
by Nate Coraor
problem upload data file by Eric Guo
1
by Nate Coraor
Not able to get data from UCSC table browser by Peng Yu
3
by Nate Coraor
tool_type="data_source_async" by Matt Vincent
0
by Matt Vincent
Bam Format by Giuseppe Petrosino
1
by Jeremy Goecks
(OperationalError) unable to open database file by Cai Shaojiang
0
by Cai Shaojiang
biocloudcentral.org says "Amazon connection problem: A problem starting EC2 instance. Check AWS console. " by greg
2
by greg
Bug ? in Galaxy Cloudman display by Greg Edwards
1
by Enis Afgan
Running cufflinks on a genome without a bowtie index by Noa Sher-2
1
by Jeremy Goecks
CloudMan - The connection has timed out by greg
4
by Enis Afgan
How to determine version of Galaxy from main page by Greg Edwards
3
by Greg Edwards
suggestions for de novo assembly plant transcriptome without reference by Jane Song
2
by Jeremy Goecks
De novo assembly plant transcriptome by Bao-Hua Song
0
by Bao-Hua Song
Re: RE : % On-Off target by Ross-2
0
by Ross-2
% On-Off target by Antoine ROUSSELIN
2
by Antoine ROUSSELIN
Search the Galaxy! by Dave Clements-3
0
by Dave Clements-3
Velvetoptimiser error by Makis Ladoukakis
1
by Greg Von Kuster-2
Workflows & Multiple datasets by Adhemar
4
by Adhemar
Tophat jobs not starting by Magdalena Strzelecka
1
by Nate Coraor
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