Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Sort sam or bam by Clare Sloggett
5
by cjav
Problem uploading files gt 1 Mbyte to Galaxy Cloud by Greg Edwards
6
by Dannon Baker
Looking for an easy "load test" for Galaxy Cloudman by Greg Edwards
2
by Kevin Lam
Could you please add Vibrio cholerae O1 biovar eltor str. N16961 to the reference genomeļ¼Ÿ by Tao Dong
1
by Jen Hillman-Jackson
Trackster errors by Erin Shanle
1
by Jeremy Goecks
Cuffdiff errors by Erin Shanle
1
by Jen Hillman-Jackson
January 20, 2012 Galaxy Development News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Recent problematic change in the Galaxy Toolshed by Florent Angly
2
by Florent Angly
tar.gz files by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
fetch sequence functionality by Lawrence Mckechnie
1
by Jen Hillman-Jackson
FASTQ joiner by Matthew Herron
1
by Jen Hillman-Jackson
Operate on genomic intervals: Join by Stephen Eacker
1
by Jen Hillman-Jackson
cufflinks FPKM by Li, Jilong (MU-Stude...
1
by Jen Hillman-Jackson
Deleted history by Herve Rhinn
1
by Jen Hillman-Jackson
BWA not recognize FASTQ query file by Cai Shaojiang
3
by Jen Hillman-Jackson
Galaxy Bowtie alignment stats report by Eric Guo
1
by Jen Hillman-Jackson
SNPEff - Reports Gain of Stop Codon as FRAME_SHIFT in some cases by John David Osborne
1
by Jen Hillman-Jackson
Trouble getting tophat to run on built-in index genome by Noa Sher-2
1
by Jen Hillman-Jackson
Fixed parts inside workflows by Saadeh, Heba
1
by Jen Hillman-Jackson
SAM tools pileup by Patrick Kenneth Gonz...
0
by Patrick Kenneth Gonz...
Data files for FunDO tool in Human Genome Variation? by Paniagua, Eric
2
by Paniagua, Eric
SAM tools pileup in Galaxy by Patrick Kenneth Gonz...
0
by Patrick Kenneth Gonz...
Cufflinks display in ucsc by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
universe_wsgi.ini and .htaccess file by Sarah Maman-2
2
by Jen Hillman-Jackson
Add Reference Genome by asidhu
3
by Jen Hillman-Jackson
importing data to a local instance of Galaxy by Joshua Gross
1
by Greg Von Kuster-2
"Alignments" tutorial now working by Paralkar, Vikram
2
by Paralkar, Vikram
Unable to download files from barcode splitter (from public Galaxy) by Poh Leng Chong
1
by Jen Hillman-Jackson
Login error + admin rights by sarah Maman
3
by Jen Hillman-Jackson
Should I hg update a Galaxy Cloud ? by Greg Edwards
1
by Dannon Baker
CloudMan - Galaxy - Sharing Confusion by greg
7
by Enis Afgan
Galaxy Cufflinks update? by Scroggins, Sheena
1
by Jen Hillman-Jackson
CloudMan - Persist changes to file system is not a hyperlink / clickable by greg
5
by greg
CloudMan - Startup Options - Galaxy Cluster vs Data Cluster by greg
7
by greg
Hi by bbyan
2
by Jen Hillman-Jackson
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