Galaxy Users List Archive

This forum is an archive for the mailing list galaxy-user@bx.psu.edu (more options) Messages posted here will be sent to this mailing list.
Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
user/groups/roles/permissions ??? by Bernd Jagla
1
by Jen Hillman-Jackson
How to get reads counts from cufflins? by Li, Jilong (MU-Stude...
4
by Luciano Cosme-2
Tophat settings by Jack Colicchio
1
by Jeremy Goecks
about Mapping Quality by Li, Jilong (MU-Stude...
2
by Kevin Silverstein
ftp server by Sebahattin Cirak
1
by Jen Hillman-Jackson
April 2012 GMOD meeting registration open by Scott Cain
0
by Scott Cain
Database Function by La Chi
0
by La Chi
How can I tell what programs are used by a tool? by Beale, Holly (NIH/NH...
2
by Beale, Holly (NIH/NH...
Question about uploading custom index for bowtie by William Light
2
by Jen Hillman-Jackson
SamTools Filter Pileup "Only report variants?" option is misleading by Jesse Erdmann
1
by Jen Hillman-Jackson
Re: Disk Quote by Zack Liu
1
by Jen Hillman-Jackson
RNA-Seq analysis by guzhi12345
0
by guzhi12345
RNA-Seq analysis by guzhi12345
0
by guzhi12345
Tophat by guzhi12345
1
by Jen Hillman-Jackson
Condor in bioinformatics pipeline by Nathan Panike
0
by Nathan Panike
bx.seq.twobit - write a 2bit file? by Amit Indap
1
by Bob Harris
The size of the history by guzhi12345
1
by Dannon Baker
FTP and Biomart by guzhi12345
1
by Jen Hillman-Jackson
A simple operation didn't work out by guzhi12345
1
by Dannon Baker
clustering algorithm in Galaxy by Daniel Elleder
1
by Jen Hillman-Jackson
February 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Gene and transcript names from Cuffdiff by guzhi12345
1
by Jen Hillman-Jackson
Server Error when running workflow by Stephen Eacker
1
by Dannon Baker
Error during data upload of fastq.gz by Stefan Kroeger
5
by Nate Coraor
CloudMan Web Launcher / BioCloudCentral - Not showing public DNS by greg
8
by Jen Hillman-Jackson
Walltime exceeded by Hemarajata, Peera
1
by Jeremy Goecks
BioCloud Cenral - More Instance types options? by greg
0
by greg
January 27, 2012 Galaxy Distribution & News Brief by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
New Genome Load Request by Mark Guiltinan
3
by Mark Guiltinan
Removing duplicate lines from a table by S├ębastien Vigneau
1
by Jen Hillman-Jackson
Cufflinks merging more than one transcript on bacterial genomes by Noa Sher-2
1
by Jeremy Goecks
BioCloudCentral - First Launch Not Working by greg
7
by greg
Cloudman - Cluster could not complete job errors by Dave Lin
1
by Enis Afgan
CloudMan - SGE / Cluster Questions by greg
4
by greg
Resuming FTP uploads to main server by Hemarajata, Peera
1
by Jen Hillman-Jackson
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