Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Tophat by guzhi12345
1
by Jen Hillman-Jackson
Job running speed is really slow by guzhi12345
1
by Jen Hillman-Jackson
Clustal error during Bowtie run (public server) by Hemarajata, Peera
1
by Jen Hillman-Jackson
question from a new Galaxy user by Elwood Linney, Ph.D.
2
by Kevin Lam
Speed up uploading into local Galaxy, terribly slow!! by Alejandra Rougon
18
by Alejandra Rougon
FastQC in main galaxy server? by Daniel Sobral
1
by Jen Hillman-Jackson
description of "Find diagnostic hits" by William Hsiao
2
by William Hsiao
Fwd: visualisation of a bam file by DeQuincy Prescott (U...
2
by Jen Hillman-Jackson
question from new Galaxy user by Elwood Linney
0
by Elwood Linney
PE reads d ont map after trimming by Buxton Chris (NORTH ...
3
by Jen Hillman-Jackson
Cufflink not working by Ateequr Rehman
1
by Jen Hillman-Jackson
Problem using Galaxy on the cloud by Jan R McDowell
1
by Jen Hillman-Jackson
Variable number of inputs in Workflow (or optional inputs) by Daniel Sobral
3
by Jen Hillman-Jackson
BAM to SAM by Matthew McCormack
1
by Jen Hillman-Jackson
April GMOD meeting early registration by Scott Cain
0
by Scott Cain
Galaxy unable to set metadata for GFF files by Hemarajata, Peera
2
by Jen Hillman-Jackson
Production environment and Apache's sendfile by Yuri D'Elia
1
by Jen Hillman-Jackson
Progress indicators/feedback for long jobs on Galaxy by Greg Edwards
1
by Jen Hillman-Jackson
Error on custom builds on public galaxy server by David Beck
0
by David Beck
error uploading from ftp site by Keith E. Giles
1
by Dannon Baker
Error in DepthOfCoverage (GATK) tool by Praveen Raj Somaraja...
3
by Daniel Blankenberg
Re: [galaxy-bugs] GI errors in the megablast table of results ? by Guru Ananda
1
by Peter Cock
Getting errors trying to enable samtools_mpileup by Waldron, Michael H
1
by Jen Hillman-Jackson
Filtering reads on wrong strand before FPKM scoring on cufflinks by Noa Sher-2
1
by Bomba Dam
Quality trimming of sequences before RNA-Seq by Noa Sher-2
1
by Bomba Dam
March 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Analysis 454 quality data by Elad Firnberg
1
by Jen Hillman-Jackson
Sam filtering and Header/Sorting issues by denis puthier
2
by denis puthier
FASTQ groomer processing time by Matthew McCormack
1
by Bossers, Alex
demultiplex Miseq data with separate index file. by Philip Dean
1
by Bossers, Alex
Convert SAM to bigwig by Steve Taylor
1
by Jen Hillman-Jackson
Data not uploading in Local instance by Luciano Cosme
2
by Jen Hillman-Jackson
TopHat version in GALAXY by GP
2
by Jen Hillman-Jackson
questions on directionality by Maness, Nicholas J
1
by Jeremy Goecks
Pre-processing of Illumina RNA-Seq paired end data by Ravi Karra
7
by Victor Ruotti
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