Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Cuffmerge - "Use Sequence" option. by Mohammad Heydarian
1
by Jeremy Goecks
MegaBLAST output by garlicscape
13
by Peter Cock
Arabidopsis thaliana genome by Franziska Turck
3
by Matthew McCormack
USing GATK DepthOfCoverage with all exon enriched data by Lilach F
2
by Jen Hillman-Jackson
Cuffdiff by Ateequr Rehman
2
by Jen Hillman-Jackson
How to replace ensembl gene ID with gene names in Cuffdiff output? by Wei Liao
1
by Jen Hillman-Jackson
Creating a galaxy tool in R - "You must not use 8-bit bytestrings" by Dan Tenenbaum
0
by Dan Tenenbaum
Data upload... by Gregory Miles
5
by Greg Von Kuster-2
Re: 1. cuffcompare or cuffmerge (???) by Wei Liao
0
by Wei Liao
cuffcompare or cuffmerge by guzhi12345
0
by guzhi12345
GATK tools: other genome available? by Jean JAUBERT
1
by Jen Hillman-Jackson
Annotation by hsharm03
3
by Jen Hillman-Jackson
Re: how to do an enrichment analysis in Galaxy by Anton Nekrutenko
0
by Anton Nekrutenko
Re: [galaxy-dev] Create and Transfer Galaxy Page by Jeremy Goecks
4
by Jeremy Goecks
"Server Error"on Main when viewing or downloading FastQC results by Davis, Wade
1
by Dannon Baker
Re: [galaxy-dev] Tophat output by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Obtain 3' UTR by Luciano Cosme
0
by Luciano Cosme
Tophat mapping by guzhi12345
4
by Jeremy Goecks
Screencasts on screencast.g2.bx.psu.edu ? by Peter van Heusden
1
by Dannon Baker
Fwd: Create and Transfer Galaxy Page by Todd Oakley
0
by Todd Oakley
Re: Adapter Clipping tool by Xianrong Wong
1
by Jen Hillman-Jackson
ValueError on startup: workaround by John Norris [jnn]
0
by John Norris [jnn]
Help!! Tophat paired end reads by guzhi12345
2
by cjav
Can we change - bwasw command in Galaxy by shamsher jagat
1
by Jen Hillman-Jackson
How to use collapsed sequence files in mapping and displaying by Jun Lu
1
by Jen Hillman-Jackson
wig to bigwig error by Michael Sikes
5
by Jen Hillman-Jackson
GCC2012 Abstract Submission Deadline is April 16, one week from today. by Dave Clements-3
1
by Dave Clements-3
Toolshed initial upload errors out by Paul-Michael Agapow
1
by Greg Von Kuster-2
Editing workflows : Server error ? by Sandrine Hughes
3
by Sandrine Hughes
FASTQ joiner fails to join PE data. by meganathan pr
1
by Jen Hillman-Jackson
Help!! Uploading with FTP by guzhi12345
1
by Jen Hillman-Jackson
Job waiting to RUN by Ateeq ur Rehman
3
by Jen Hillman-Jackson
Alignment coordinates by Erika Kruse
2
by Ross-2
History not accessible by Luciano Cosme
1
by Jen Hillman-Jackson
find nothing but Workflows by dongdong zhaoweiming
1
by Jeremy Goecks
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