Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
upload problem by sujata dhar
1
by Scott McManus
Page edition bug by Felix Homa
0
by Felix Homa
Galaxy Reference Genome by Kristen Roop
3
by Jen Hillman-Jackson
regarding Fusion transcript detection by Amit Pande
1
by Jen Hillman-Jackson
stdout and stderr files by rpnm
2
by rpnm
GCC2012 Early Registration ENDS THIS MONDAY JUNE 11 by Dave Clements-3
0
by Dave Clements-3
requirements by McGowan, Kevin M.
1
by Jen Hillman-Jackson
Question about Galaxy by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Updates to CloudMan by Enis Afgan
0
by Enis Afgan
Cufflinks GTF by rlinch2@gmail.com
1
by Jen Hillman-Jackson
Re: Sequences are not currently available for the specified build. by rlinch2@gmail.com
2
by Jen Hillman-Jackson
problems with the uploading by Monica BALLARINO
2
by Luciano Cosme
Genome Browser Histogram Visualization of Accepted Hits by Fowler, Trent
4
by Jen Hillman-Jackson
Tophat "Mean Inner Distance between Mate Pairs" by guzhi12345
4
by Jen Hillman-Jackson
(no subject) by megan.estorninho
3
by Jen Hillman-Jackson
GCC2012 Early Registration ends in 1 week by Dave Clements-3
0
by Dave Clements-3
email database by Roger Liu
0
by Roger Liu
ChIP-seq data analysis question by cjt5
0
by cjt5
Cufflinks error with illumina igenome .GTF for annnotation by Sarah Elisabeth Ewal...
2
by Jen Hillman-Jackson
June 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
galaxy cloud not setting up properly by Randall, Thomas (NIH...
1
by Enis Afgan
Question about fetching sequence from genome by Qianli Shen
1
by Jen Hillman-Jackson
How to control registration by Zeeshan Ali Shah
5
by Zeeshan Ali Shah
Bowtie mapping problem by Kelkar, Hemant
1
by Jen Hillman-Jackson
How to transfer files between two galaxy instances by shamsher jagat
6
by Dannon Baker
How To Keep Original Sample Names in Galaxy through Cufflinks pipeline? by webercm
1
by Bidwell, Christopher...
GATK workshop survey by Geraldine Van der Au...
0
by Geraldine Van der Au...
Bam to Fastq conversion by William M. Strauss
1
by Ross-2
Runtime on public Galaxy and current version of Galaxy on the Cloud? by Diana Cox-Foster
3
by Enis Afgan
cloud instance of galaxy by Randall, Thomas (NIH...
2
by Dave Clements-3
Problem using Galaxy by Seyed Mehdi Jazayeri
1
by Nate Coraor
Maq consensus calling changes quality score of the read? by Antony Jose
1
by Jen Hillman-Jackson
Mapping paired end reads with Tophat by guzhi12345
1
by Jen Hillman-Jackson
Examples of quality score boxplots for 5500xl data by Faber, Pieter [BSD] ...
0
by Faber, Pieter [BSD] ...
server problem by Elaine Wong
1
by Jen Hillman-Jackson
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