Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
mpileup max coverage by Wang, Michael
1
by Jen Hillman-Jackson
Installing tool in galaxy on cloud by Malik, Shivani
1
by Dannon Baker-2
remove versions of tool by Ketan Maheshwari
2
by Ketan Maheshwari
special character $ gets converted to X in tool by Ketan Maheshwari
4
by Ketan Maheshwari
problem with scientific notation sorting and filtering in galaxy by Douglas Cavener
1
by Dave Clements-3
GATK - Base recalibrator by Bolduc, Francois
1
by Geraldine Van der Au...
February 2014 Galaxy Update Newsletter by Dave Clements-3
0
by Dave Clements-3
visualization through Trackster on local Galaxy installation by Yupu Liang
6
by Jen Hillman-Jackson
Install tools from Toolshed by Malik, Shivani
1
by Jen Hillman-Jackson
Genome of interest is not listed by Vikash Yadav
1
by Jen Hillman-Jackson
Creating a Trackster visualisation from a reference in your history by graham etherington (...
2
by Jeremy Goecks-2
Question in converting gtf file for p_id by Yanxiang Shi
3
by Jen Hillman-Jackson
problem uploading files by Emmanuelle Lerat
1
by Jen Hillman-Jackson
usegalaxy.org is down? by leontovich.alexey@ma...
1
by Peter Cock
error:ordinary output of macs in stderr by 韩宏庆
1
by Björn Grüning-2
re by Larry Simpson
1
by Björn Grüning-2
GATK2 Galaxy wrapper available, testing and help needed by Björn Grüning-2
0
by Björn Grüning-2
Galaxy Australasia Workshop (GAW 2014), 24-25 March, Melbourne by Dave Clements-3
0
by Dave Clements-3
Trying to "unshare" a history in order to delete by scalzod
3
by Jen Hillman-Jackson
all FPKMs are 0 in the tmap files produced by cuffcompare by Yang Bi
5
by Jen Hillman-Jackson
add T. brucei 927 genome to Galaxy main? by swfeltz
2
by swfeltz
Help by Pasquale Notarangelo
1
by Jen Hillman-Jackson
Unable to upload data via ftp site by Varsha Pardeshi
2
by Jen Hillman-Jackson
bam to bigwig by swfeltz
2
by swfeltz
download contains the html file by Neil.Burdett
2
by Neil.Burdett
Monitoring usage by Neil.Burdett
1
by Enis Afgan-2
January 2014 Galaxy CloudMan Release by Enis Afgan-2
0
by Enis Afgan-2
GCC2014 Training Day Topic Voting open January 6-17 by Dave Clements-3
0
by Dave Clements-3
Importing workflow from file fails in Galaxy instance on Amazon Cloud by Sébastien Vigneau
1
by Dannon Baker-2
Preferred way to make custom tool accessible though path by Sébastien Vigneau
1
by Jen Hillman-Jackson
FASTQ splitter empty and FASTQ manipulator doesn't work by patterja
1
by Jen Hillman-Jackson
multiplex data by aholtzmorris
2
by Jen Hillman-Jackson
bigWig to wig conversion by Sébastien Vigneau
1
by Jen Hillman-Jackson
using SnpEff and SNPSift in Galaxy by shamsher jagat
1
by Jen Hillman-Jackson
Can REMOTE_USER be changed to another header variable? by Velayutham, Prakash ...
1
by Jen Hillman-Jackson
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