Galaxy Users List Archive

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Galaxy

This is the archive for the Galaxy-User mailing list, which was used from 2006 through April 2014 for Galaxy user support. In April 2014, Galaxy user support switched from the mailing list archived here to the Galaxy Biostar online forum. At that time this entire archive was also copied to the Galaxy Biostar site.

This list is no longer active.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2788)
Replies Last Post Views
Indexing files everytime - Performance Issue by Praveen Raj Somaraja...
1
by Jen Hillman-Jackson
An error in reporting a tool error... by leah reshef
1
by Jen Hillman-Jackson
Permission denied error when running fastqc by Aarti Desai-2
4
by Aarti Desai-2
HIDATA by Daiene Santos
1
by Jen Hillman-Jackson
Data from history now showing up in fastq drop down by Aarti Desai-2
2
by Aarti Desai-2
Problem with ftp transfer of large bam files by Hans Matsson
2
by Hans Matsson
Re: Getting reference index files in local galaxy install by Aarti Desai-2
3
by Aarti Desai-2
tool_path by Fabien Mareuil
3
by Greg Von Kuster-2
cufflinks by Jen Hillman-Jackson
3
by Paul Orwin
GMOD Summer School application deadline by Scott Cain
0
by Scott Cain
request for a new genome (Aedes aegypti) by Laurence Després
1
by Jen Hillman-Jackson
sanitizer for carriage return by Katrien
0
by Katrien
July 2012 Galaxy Update by Dave Clements-3
0
by Dave Clements-3
Re: Data upload issues on Galaxy by Fatih Ozsolak
0
by Fatih Ozsolak
Problem with Depth of Coverage on BAM files (GATK tools) by Lilach F
12
by Jen Hillman-Jackson
Cannot upload file to data library by Ciara Ledero
2
by Ciara Ledero
Quick question about cuff compare by Jason Serviss
2
by Jen Hillman-Jackson
Complete Genomics CGA Tools™� in Galaxy by Birgit Crain
0
by Birgit Crain
How to revive my account that had been marked as "deleted"? by 碩璜陳
0
by 碩璜陳
Converting to index files of viral genome for running TopHAT by shamsher jagat
1
by Jen Hillman-Jackson
Job is waiting to run for two days.. by Shanshan Pang
1
by Nate Coraor
2012 Systems Bioinformatics Workshop by Christopher Bare
0
by Christopher Bare
Include a data folder into Galaxy by Norbert Grundmann
3
by Luciano Cosme
Bowtie and BWA queue..other jobs dont by Antony Jose
2
by Antony Jose
jobs stuck on Galaxy by Fatih Ozsolak
3
by Jen Hillman-Jackson
CUFFLINK does not work! by Jen Hillman-Jackson
0
by Jen Hillman-Jackson
Tophat and Bowtie2 by Luciano Cosme
1
by Luciano Cosme
generate pileup not working? by Lilach F
2
by Lilach F
FTP Error 530 Sorry, the maximum number of clients (3) for this user are already connected. by webercm
1
by Jen Hillman-Jackson
Inconsistency between cufflinks and cuffdiff. This is killing me. by Jia Meng
3
by Jen Hillman-Jackson
jobs not running on main server by Jacob Musser
1
by Nate Coraor
Galaxy main not running jobs.. by Jayaraman, Shyam
1
by Nate Coraor
FTP down? by John Clayton
1
by Nate Coraor
GMOD Summer School now accepting applications by Scott Cain
0
by Scott Cain
Galaxy in AWS AMI by Lilach F
4
by Lilach F
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