Error message

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Error message

Heller Gerwin
Hello!

I use Galaxy to convert unaligned .bam files (RNA-seq) to fastq files.
That works! Then i want to align the fastq files using TopHat2 or
Tophat, but the analysis does not start since yesterday. However, I
received the following error message several times since yesterday:

Details
user
username null
quota_percent 30
total_disk_usage 81718693796
nice_total_disk_usage 76.1 GB
email [hidden email]
tags_used
model_class User
id 12477bb953a54e27
source HDACollection(9b2b9157fa89d388,193)
xhr
readyState 4
responseText "Error in history API at listing contents: url_for could
not generate URL. Called with args: ('history_content',) {'history_id':
u'9b2b9157fa89d388', 'id': 'bbd44e69cb8906b5a211f8cf18ab3f22'}"
responseJSON Error in history API at listing contents: url_for could not
generate URL. Called with args: ('history_content',) {'history_id':
u'9b2b9157fa89d388', 'id': 'bbd44e69cb8906b5a211f8cf18ab3f22'}
status 500
statusText Internal Server Error
responseHeaders
Server nginx/1.4.4
Date Tue, 04 Mar 2014 12:52:02 GMT
Content-Type application/json
Transfer-Encoding chunked
Connection keep-alive
Cache-Control max-age=0,no-cache,no-store
options
data
parse true
emulateHTTP false
emulateJSON false


Thanks for help!!

With kind regards, Gerwin Heller

--
Gerwin Heller, Ph.D.
Medical University of Vienna
Department of Medicine I
Division of Oncology
Währinger Gürtel 18-20
A-1090 Vienna, Austria
Phone: +43 1 40400 4433
Fax: +43 1 40400 4451
___________________________________________________________
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Galaxy analysis and other features on the public server
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using "reply all" in your mail client.  For discussion of
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Re: Error message

Jen Hillman-Jackson
Hello Heller,

The server errors were a transient issue. Our apologies for the
confusion. I can see that your jobs are now processing. This wiki
section explains in more detail about how to interpret interface cues to
determine job status:
https://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute

Best,

Jen
Galaxy team

On 3/4/14 5:17 AM, Heller Gerwin wrote:

> Hello!
>
> I use Galaxy to convert unaligned .bam files (RNA-seq) to fastq files.
> That works! Then i want to align the fastq files using TopHat2 or
> Tophat, but the analysis does not start since yesterday. However, I
> received the following error message several times since yesterday:
>
> Details
> user
> username    null
> quota_percent    30
> total_disk_usage    81718693796
> nice_total_disk_usage    76.1 GB
> email    [hidden email]
>
>
> Thanks for help!!
>
> With kind regards, Gerwin Heller
>

--
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/
Jennifer Hillman-Jackson
http://galaxyproject.org