Empty bowtie2 output

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Empty bowtie2 output

Mikel Egaña Aranguren
Hi;

I'm trying to use the bowtie2 wrapper but it generates and empty output with the "no peek" sign. I have sucesfully recreated the analysis with the same datatsets on the shell, so it must be something to do with Galaxy, but I don't know where to look at. Any clues? Thanks

I'm using bowtie2-2.1.0 and Galaxy: 

changeset:   10421:a477486bf18e
branch:      stable
tag:         tip
user:        Nate Coraor <[hidden email]>
date:        Thu Sep 26 11:02:58 2013 -0400
summary:     Bugfix for tool-to-destination mapping, tool ids are lowercased but the mapping id was not lowercased

--
Mikel Egaña Aranguren, Ph.D.

http://mikeleganaaranguren.com



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Re: Empty bowtie2 output

Jen Hillman-Jackson
Hello Mikel,

This is a known issue with Bowtie2 at this time and a correction is in progress.

Sorry for any confusion,

Jen
Galaxy team

On 10/9/13 8:57 AM, Mikel Egaña Aranguren wrote:
Hi;

I'm trying to use the bowtie2 wrapper but it generates and empty output with the "no peek" sign. I have sucesfully recreated the analysis with the same datatsets on the shell, so it must be something to do with Galaxy, but I don't know where to look at. Any clues? Thanks

I'm using bowtie2-2.1.0 and Galaxy: 

changeset:   10421:a477486bf18e
branch:      stable
tag:         tip
user:        Nate Coraor <[hidden email]>
date:        Thu Sep 26 11:02:58 2013 -0400
summary:     Bugfix for tool-to-destination mapping, tool ids are lowercased but the mapping id was not lowercased

--
Mikel Egaña Aranguren, Ph.D.

http://mikeleganaaranguren.com




___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

-- 
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/
Jennifer Hillman-Jackson
http://galaxyproject.org