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Drosophila yakuba reference genome

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Drosophila yakuba reference genome

Evgeny Brud
Hi,
Could galaxy include the Drosophila yakuba reference genome for use
with Tophat? It's not listed.
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Re: Drosophila yakuba reference genome

Jen Hillman-Jackson
Hello,

The quickest way to use a genome that is not already indexed is to load
it into you history and select it as a custom genome from the TopHat
tool form with the option:

"Will you select a reference genome from your history or use a built-in
index?:" -> "Use one from the history"

Instructions are included in this wiki:
http://wiki.g2.bx.psu.edu/Learn/CustomGenomes

This genome is sourced from UCSC and is available here:
http://hgdownload.cse.ucsc.edu/downloads.html

Best,

Jen
Galaxy team

On 3/21/12 2:07 PM, Evgeny Brud wrote:

> Hi,
> Could galaxy include the Drosophila yakuba reference genome for use
> with Tophat? It's not listed.
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>    http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>    http://lists.bx.psu.edu/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/
Jennifer Hillman-Jackson
http://galaxyproject.org
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