Hello,
The quickest way to use a genome that is not already indexed is to load
it into you history and select it as a custom genome from the TopHat
tool form with the option:
"Will you select a reference genome from your history or use a built-in
index?:" -> "Use one from the history"
Instructions are included in this wiki:
http://wiki.g2.bx.psu.edu/Learn/CustomGenomesThis genome is sourced from UCSC and is available here:
http://hgdownload.cse.ucsc.edu/downloads.htmlBest,
Jen
Galaxy team
On 3/21/12 2:07 PM, Evgeny Brud wrote:
> Hi,
> Could galaxy include the Drosophila yakuba reference genome for use
> with Tophat? It's not listed.
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The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-devTo manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/